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| ==== Journal Club Articles ==== | ==== Journal Club Articles ==== | ||
| - | ^ Number ^ Author ^ Article Title ^ Keywords ^ | + | ^ Number ^ Author ^ Article Title ^ Keywords ^ Presenters ^ |
| - | | 1 | Brooksbank et al. | The European Bioinformatics Institute's data resources | Available online databases / New sequencing methods / Data Sharing | | + | | 1 | Brooksbank et al. | **The European Bioinformatics Institute's data resources** | Available online databases / New sequencing methods / Data Sharing | Inês Barbosa - UIB | |
| - | | 2 | Pertsemlidis and Fondon III. | Having a BLAST with bioinformatics (and avoiding BLASTphemy) | Sequence Similarity / BLAST / BLAST pitfalls | | + | | 2 | Pertsemlidis and Fondon III. | **Having a BLAST with bioinformatics (and avoiding BLASTphemy)** | Sequence Similarity / BLAST / BLAST pitfalls | Irina Alho - UIOC | |
| - | | 3 | Grundmann et al. | Geographic Distribution of Staphylococcus aureus Causing Invasive Infections in Europe: A Molecular-Epidemiological Analysis | Epidemiological Information Systems / Geographic clonal distribution / bacterial spread and evolution | | + | | 3 | Grundmann et al. | **Geographic Distribution of Staphylococcus aureus Causing Invasive Infections in Europe: A Molecular-Epidemiological Analysis** | Epidemiological Information Systems / Geographic clonal distribution / bacterial spread and evolution | Cristina Silva - UPV | |
| - | | 4 | Francisco et al. | Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach | MutliLocus Sequence Typing / Evolutionary Models / Patterns of descent inference and visualization | | + | | 4 | Francisco et al. | **Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach** | MutliLocus Sequence Typing / Evolutionary Models / Patterns of descent inference and visualization | Elisabete Martins - UMMI | |
| - | | 5 | Pesquita et al. | Semantic similarity in biomedical ontologies | Data description / Comparison of current ontologies / Data integration | | + | | 5 | Pesquita et al. | **Semantic similarity in biomedical ontologies** | Data description / Comparison of current ontologies / Data integration | Daniel Silva - USI | |
| - | | 6 | Milo et al. | Network motifs: simple building blocks of complex networks | Genetic networks / Motif finding / Real networks vs Random networks | | + | | 6 | Milo et al. | **Network motifs: simple building blocks of complex networks** | Genetic networks / Motif finding / Real networks vs Random networks | Susana Gonçalves - UNCM | |
| - | | 7 | Huttenhower et al. | Exploring the human genome with functional maps | Human genomics / Interaction networks / Data Mining | | + | | 7 | Huttenhower et al. | **Exploring the human genome with functional maps** | Human genomics / Interaction networks / Data Mining | Filomena Carvalho e Pedro Matos - UBM | |
| - | | 8 | Samaga et al. | The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data | Signalling network / Qualitative modeling /Large-scale network analysis as a whole | | + | | 8 | Samaga et al. | **The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data** | Signalling network / Qualitative modeling /Large-scale network analysis as a whole | Andrea Santos e André Faustino - UBM | |
| - | | 9 | Farhadifar et al. | The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packing | Cell packing / Cell proliferation / Epithelial growth modeling | | + | | 9 | Farhadifar et al. | **The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packing** | Cell packing / Cell proliferation / Epithelial growth modeling | Vitor Silva e Vera Geraldes - USNA | |
| - | | 10 | Chavali et al. | Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major | Systems biology / Gene Network reconstruction / Metabolic networks | | + | | 10 | Chavali et al. | **Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major** | Systems biology / Gene Network reconstruction / Metabolic networks | Sandra Aguiar e Ana Severiano - UMMI | |
| - | | 11 | Jones et al. | The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere | ecoinformatics / data integration / data sharing | | + | | 11 | Jones et al. | **The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere** | ecoinformatics / data integration / data sharing | Maria João Frias - UMMI | |
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