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publications [2019/12/04 17:56]
ramirez
publications [2021/01/07 19:03] (current)
ramirez [2021]
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 ====== Publications ====== ====== Publications ======
 +
 +===== 2021  =====
 +Mamede R, Vila-Cerqueira P, Silva M, [[people:​jcarrico|Carriço JA]], [[people:​ramirez|Ramirez M]]. 2021. <fc #​0000FF>​Chewie Nomenclature Server (chewie-NS):​ a deployable nomenclature server for easy sharing of core and whole genome MLST schemas</​fc>​. Nucleic Acids Res 49:​D660–D666. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33068420|(PMID:​ 33068420)]]
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 +Barros Pinto MP, Marques G, [[people:​jmelocristino|Melo-Cristino J]]. 2021 <fc #​0000FF>​Promastigotes of //​Leishmania//​ spp. developing in human bone marrow in vitro</​fc>​. Br J Haematol 192:7. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32945533|(PMID:​ 32945533)]]
 +
 +===== 2020  =====
 +Utzinger KS, Held U, Hänscheid T, Gültekin N, Fehr J, Grobusch MP, Schlagenhauf P. 2020. <fc #​0000FF>​Self-diagnosis and self-treatment of //​Plasmodium//​ spp. infection by travellers (1989-2019):​ A systematic review and meta-analysis</​fc>​. Travel Med Infect Dis 38:101902. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33132136|(PMID:​ 33132136)]]
 +
 +Figueiredo-Campos P, Blankenhaus B, Mota C, Gomes A, Serrano M, Ariotti S, Costa C, Nunes-Cabaço H, Mendes AM, Gaspar P, Pereira-Santos MC, Rodrigues F, Condeço J, Escoval MA, Santos M, [[people:​ramirez|Ramirez M]], [[people:​jmelocristino|Melo-Cristino J]], Simas JP, Vasconcelos E, Afonso Â, Veldhoen M. 2020. <fc #​0000FF>​Seroprevalence of anti-SARS-CoV-2 antibodies in COVID-19 patients and healthy volunteers up to six months post disease onset</​fc>​. Eur J Immunol 50:​2025–2040. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33084029|(PMID:​ 33084029)]]
 +
 +Dubbink JH, Branco TM, Kamara KB, Bangura JS, Wehrens E, Falama AM, Goorhuis A, Jørgensen PB, Sevalie SS, Hänscheid T, Grobusch MP. 2020. <fc #​0000FF>​COVID-19 treatment in sub-Saharan Africa: If the best is not available, the available becomes the best</​fc>​. Travel Med Infect Dis 37:101878. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32927051|(PMID:​ 32927051)]]
 +
 +Pinto MPB, [[people:​jmelocristino|Melo-Cristino J]]. <fc #​0000FF>​Sporogonic cycle of //​Plasmodium falciparum//​ in a human blood. sample</​fc>​ Am J Hematol //In press//. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32857861|(PMID:​ 32857861)]]
 +
 +Pinto M, Rodrigues JC, Matias R, Água-Doce I, Cordeiro D, Correia C, Gomes JP, Borrego MJ, PTGonoNet. 2020. <fc #​0000FF>​Fifteen years of a nationwide culture collection of //Neisseria gonorrhoeae//​ antimicrobial resistance in Portugal</​fc>​. Eur J Clin Microbiol Infect Dis 39:​1761–1770. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32494956|(PMID:​ 32494956)]]
 +
 +Grobusch MP, van der Fluit KS, Stijnis C, De Pijper CA, Hänscheid T, Gautret P, Schlagenhauf P, Goorhuis A. 2020. <fc #​0000FF>​Can dengue virus be sexually transmitted?</​fc>​ Travel Med Infect Dis 101753. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32473313|(PMID:​ 32473313)]]
 +
 +García-Fernández S, García-Castillo M, [[people:​jmelocristino|Melo-Cristino J]], Pinto MF, Gonçalves E, Alves V, Vieira AR, Ramalheira E, Sancho L, Diogo J, Ferreira R, Silva D, Chaves C, Pássaro L, Paixão L, Cantón R, STEP Study Group. 2020. <fc #​0000FF>​In vitro activity of ceftolozane-tazobactam against //​Enterobacterales//​ and //​Pseudomonas aeruginosa//​ causing urinary, intra-abdominal and lower respiratory tract infections in intensive care units in Portugal: The STEP multicenter study</​fc>​. Int J Antimicrob Agents 55:105887. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31926283|(PMID:​ 31926283)]]
 +
 +González-Díaz A, [[people:​mpmachado|Machado MP]], Càmara J, Yuste J, Varon E, Domenech M, Del Grosso M, Marimón JM, Cercenado E, Larrosa N, Quesada MD, Fontanals D, El-Mniai A, Cubero M, [[people:​jcarrico|Carriço JA]], Martí S, [[people:​ramirez|Ramirez M]], Ardanuy C. 2020. <fc #​0000FF>​Two multi-fragment recombination events resulted in the β-lactam-resistant serotype 11A-ST6521 related to Spain9V-ST156 pneumococcal clone spreading in south-western Europe, 2008 to 2016</​fc>​. Euro Surveill 25:​pii=1900457.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​32347199|(PMID:​ 32347199)]]
 +
 +[[people:​cmendes|Mendes CI]],​Lizarazo E, [[people:​mpmachado|Machado MP]], Silva DN, Tami A, [[people:​ramirez|Ramirez M]], Couto N, Rossen JWA, [[people:​jcarrico|Carriço JA]]. 2020. <fc #​0000FF>​DEN-IM:​ dengue virus genotyping from amplicon and shotgun metagenomic sequencing</​fc>​. Microb Genom 6:e000328. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32134380|(PMID:​ 32134380)]]
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 +Hänscheid T, Valadas E, Grobusch MP. 2020. <fc #​0000FF>​Coronavirus 2019-nCoV: Is the genie already out of the bottle?</​fc>​ Travel Med Infect Dis 101577. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32044388|(PMID:​ 32044388)]]
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 +Hänscheid T, Vieira S, Ferreira P, Carvalho T, Belo S, Grobusch MP. 2020. <fc #​0000FF>​The fluorescent acid-fast stain, auramine-O, stains schistosome eggs and may be an aid for detection. An old technique with a useful future?</​fc>​ Travel Med Infect Dis 35:101569. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32006658|(PMID:​ 32006658)]]
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 +van der Linden M, Mamede R, Levina N, Helwig P, Vila-Cerqueira P, [[people:​jcarrico|Carriço JA]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​emartins|Martins ER]]. 2020. <fc #​0000FF>​Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany</​fc>​. J Antimicrob Chemother. 75:​296–299. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31740946|(PMID:​ 31740946)]]
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 +Hänscheid T, Grobusch MP. 2020. <fc #​0000FF>​Coenzyme Q10 and cerebral malaria in mice: Questionable interpretations,​ improbable usefulness in humans</​fc>​. Parasitol Int 74:101969. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31421269|(PMID:​ 31421269)]]
  
 ===== 2019  ===== ===== 2019  =====
 [[people:​afriaes|Friães A]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Portuguese Group for the Study of Streptococcal Infections. 2019. <fc #​0000FF>​Changes in //emm// types and superantigen gene content of //​Streptococcus pyogenes// causing invasive infections in Portugal</​fc>​. Sci Rep 9:18051. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31792274|(PMID:​ 31792274)]] [[people:​afriaes|Friães A]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Portuguese Group for the Study of Streptococcal Infections. 2019. <fc #​0000FF>​Changes in //emm// types and superantigen gene content of //​Streptococcus pyogenes// causing invasive infections in Portugal</​fc>​. Sci Rep 9:18051. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31792274|(PMID:​ 31792274)]]
  
-van der Linden MMamede R, Levina N, Helwig ​P, Vila-Cerqueira P, Carriço JA, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​emartins|Martins ER]]. 2019. <fc #​0000FF>​Heterogeneity of penicillin-non-susceptible group B streptococci isolated from single patient ​in Germany</​fc>​. J Antimicrob Chemother. //In press//. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31740946|(PMID: ​31740946)]]+Hänscheid TSchlagenhauf ​P, Grobusch MP. 2019. Atovaquone/​proguanil for malaria chemoprophylaxis ​Could difference ​in susceptibility during hepatic development explain the need to continue drug intake for 7 days post-exposure?​ Travel Med Infect Dis 101527. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31759143|(PMID: ​31759143)]]
  
 Duque-Valencia J, Forero-Muñoz NR, Díaz FJ, [[people:​emartins|Martins E]], Barato P, Ruiz-Saenz J. 2019. <fc #​0000FF>​Phylogenetic evidence of the intercontinental circulation of a canine distemper virus lineage in the Americas</​fc>​. Sci Rep 9:15747. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31673120|(PMID:​ 31673120)]] Duque-Valencia J, Forero-Muñoz NR, Díaz FJ, [[people:​emartins|Martins E]], Barato P, Ruiz-Saenz J. 2019. <fc #​0000FF>​Phylogenetic evidence of the intercontinental circulation of a canine distemper virus lineage in the Americas</​fc>​. Sci Rep 9:15747. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31673120|(PMID:​ 31673120)]]
  
-Hänscheid TGrobusch MP. 2019. <fc #0000FF>Coenzyme Q10 and cerebral malaria ​in mice: Questionable interpretations,​ improbable usefulness in humans</​fc>​. ​Parasitol Int //In press//. [[http://​www.ncbi.nlm.nih.gov/​pubmed/31421269|(PMID: ​31421269)]]+Fleres GCouto N, Schuele L, Chlebowicz M A, [[people:​cmendes|Mendes C I]], van der Sluis L W M, Rossen J W A, Friedrich A W, García-Cobos S. 2019. <fc #0000FF>Detection of a novel //mcr-5.4// gene variant ​in hospital tap water by shotgun metagenomic sequencing</​fc>​. ​J Antimicrob Chemother 74: 3626–3628 [[https://www.ncbi.nlm.nih.gov/pubmed/31504580|(PMID:​ 31504580)]] 
 + 
 +Espadinha D, Sobral R G, [[people:​cmendes|Mendes C I]], Méric G, Sheppard S K, [[people:​jcarrico|Carriço JA]], de Lencastre H, Miragaia M. 2019. <fc #​0000FF>​Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of // Staphylococcus epidermidis//​ Clonal Lineages</​fc>​. Front Microbiol 10: 1971. [[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC6719527/​|(PMID: ​31507574)]]
  
 Dias O, Saraiva J, Faria C, [[people:​ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #​0000FF>​iDS372,​ a phenotypically reconciled model for the metabolism of //​Streptococcus pneumoniae//​ strain R6</​fc>​. Front Microbiol 10:1283. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31293525|(PMID:​ 31293525)]] Dias O, Saraiva J, Faria C, [[people:​ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #​0000FF>​iDS372,​ a phenotypically reconciled model for the metabolism of //​Streptococcus pneumoniae//​ strain R6</​fc>​. Front Microbiol 10:1283. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31293525|(PMID:​ 31293525)]]
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 Björnsdóttir ES, [[people:​emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #​0000FF>​Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</​fc>​. Pediatr Infect Dis J. 38:​620–624. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30299423|(PMID:​ 30299423)]] Björnsdóttir ES, [[people:​emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #​0000FF>​Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</​fc>​. Pediatr Infect Dis J. 38:​620–624. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30299423|(PMID:​ 30299423)]]
 +
 +Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2019. <fc #​0000FF>​A modified case definition to facilitate essential hospital care during Ebola outbreaks</​fc>​. Clin Infect Dis. 68:​1763–1768. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30239602|(PMID:​ 30239602)]]
 +
 +Hänscheid T, Grobusch MP. 2019. <fc #​0000FF>​Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</​fc>​ Travel Med Infect Dis. 28:104. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30030070|(PMID:​ 30030070)]]
 ===== 2018  ===== ===== 2018  =====
 Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:​jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #​0000FF>​First description of colistin and tigecycline-resistant //​Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</​fc>​. Antibiotics 7. [[https://​doi.org/​10.3390/​antibiotics7040096|doi:​10.3390/​antibiotics7040096]] [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30404152|(PMID:​ 30404152)]] Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:​jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #​0000FF>​First description of colistin and tigecycline-resistant //​Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</​fc>​. Antibiotics 7. [[https://​doi.org/​10.3390/​antibiotics7040096|doi:​10.3390/​antibiotics7040096]] [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30404152|(PMID:​ 30404152)]]
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 [[people:​cpato|Pato C]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #​0000FF>//​Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</​fc>​. Front Microbiol 9:​2372.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30356787|(PMID:​ 30356787)]] [[people:​cpato|Pato C]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #​0000FF>//​Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</​fc>​. Front Microbiol 9:​2372.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30356787|(PMID:​ 30356787)]]
- 
-Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2018. <fc #​0000FF>​A modified case definition to facilitate essential hospital care during Ebola outbreaks</​fc>​. Clin Infect Dis. //In press// [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30239602|(PMID:​ 30239602)]] [[https://​doi.org/​10.1093/​cid/​ciy798|doi:​10.1093/​cid/​ciy798]] 
  
 Branco A, [[people:​jmelocristino|Melo-Cristino J]]. 2018. <fc #​0000FF>​Extreme parasitemia in //P. falciparum//​ malaria</​fc>​. Blood 132:868. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30139832|(PMID:​ 30139832)]] Branco A, [[people:​jmelocristino|Melo-Cristino J]]. 2018. <fc #​0000FF>​Extreme parasitemia in //P. falciparum//​ malaria</​fc>​. Blood 132:868. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30139832|(PMID:​ 30139832)]]
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 Branco A, Francisco D, Hänscheid T. 2018. <fc #​0000FF>​Is there a “normal” oxygen concentration for in vitro //​Plasmodium//​ cultures?</​fc>​ Trends Parasitol 34:​811–812. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30049603|(PMID:​ 30049603)]] Branco A, Francisco D, Hänscheid T. 2018. <fc #​0000FF>​Is there a “normal” oxygen concentration for in vitro //​Plasmodium//​ cultures?</​fc>​ Trends Parasitol 34:​811–812. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30049603|(PMID:​ 30049603)]]
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- 
-Hänscheid T, Grobusch MP. 2018. <fc #​0000FF>​Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</​fc>​ Travel Med Infect Dis. //In press// [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30030070|(PMID:​ 30030070)]] 
  
 Couto N, Schuele L, Raangs EC, [[people:​mpmachado|Machado MP]], [[people:​cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:​ramirez|Ramirez M]],​[[people:​jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</​fc>​. Sci Rep. 2018 Sep 13;​8(1):​13767. doi: 10.1038/​s41598-018-31873-w.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30213965 |(PMID: 30213965)]] Couto N, Schuele L, Raangs EC, [[people:​mpmachado|Machado MP]], [[people:​cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:​ramirez|Ramirez M]],​[[people:​jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</​fc>​. Sci Rep. 2018 Sep 13;​8(1):​13767. doi: 10.1038/​s41598-018-31873-w.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30213965 |(PMID: 30213965)]]
  • publications.1575478588.txt.gz
  • Last modified: 2019/12/04 17:56
  • by ramirez