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publications [2019/08/01 16:29]
jcarrico [2008]
publications [2020/01/21 10:38] (current)
ramirez [2020]
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 ====== Publications ====== ====== Publications ======
  
 +===== 2020  =====
 +van der Linden M, Mamede R, Levina N, Helwig P, Vila-Cerqueira P, Carriço JA, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​emartins|Martins ER]]. 2019. <fc #​0000FF>​Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany</​fc>​. J Antimicrob Chemother. 75:​296–299. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31740946|(PMID:​ 31740946)]]
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 +Hänscheid T, Grobusch MP. 2020. <fc #​0000FF>​Coenzyme Q10 and cerebral malaria in mice: Questionable interpretations,​ improbable usefulness in humans</​fc>​. Parasitol Int 74:101969. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31421269|(PMID:​ 31421269)]]
 ===== 2019  ===== ===== 2019  =====
 +[[people:​afriaes|Friães A]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Portuguese Group for the Study of Streptococcal Infections. 2019. <fc #​0000FF>​Changes in //emm// types and superantigen gene content of //​Streptococcus pyogenes// causing invasive infections in Portugal</​fc>​. Sci Rep 9:18051. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31792274|(PMID:​ 31792274)]]
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 +Hänscheid T, Schlagenhauf P, Grobusch MP. 2019. Atovaquone/​proguanil for malaria chemoprophylaxis - Could a difference in susceptibility during hepatic development explain the need to continue drug intake for 7 days post-exposure?​ Travel Med Infect Dis 101527. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31759143|(PMID:​ 31759143)]]
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 +Duque-Valencia J, Forero-Muñoz NR, Díaz FJ, [[people:​emartins|Martins E]], Barato P, Ruiz-Saenz J. 2019. <fc #​0000FF>​Phylogenetic evidence of the intercontinental circulation of a canine distemper virus lineage in the Americas</​fc>​. Sci Rep 9:15747. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31673120|(PMID:​ 31673120)]]
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 +Fleres G, Couto N, Schuele L, Chlebowicz M A, [[people:​cmendes|Mendes C I]], van der Sluis L W M, Rossen J W A, Friedrich A W, García-Cobos S. 2019. <fc #​0000FF>​Detection of a novel //mcr-5.4// gene variant in hospital tap water by shotgun metagenomic sequencing</​fc>​. J Antimicrob Chemother 74: 3626–3628 [[https://​www.ncbi.nlm.nih.gov/​pubmed/​31504580|(PMID:​ 31504580)]]
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 +Espadinha D, Sobral R G, [[people:​cmendes|Mendes C I]], Méric G, Sheppard S K, [[people:​jcarrico|Carriço JA]], de Lencastre H, Miragaia M. 2019. <fc #​0000FF>​Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of // Staphylococcus epidermidis//​ Clonal Lineages</​fc>​. Front Microbiol 10: 1971. [[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC6719527/​|(PMID:​ 31507574)]]
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 Dias O, Saraiva J, Faria C, [[people:​ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #​0000FF>​iDS372,​ a phenotypically reconciled model for the metabolism of //​Streptococcus pneumoniae//​ strain R6</​fc>​. Front Microbiol 10:1283. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31293525|(PMID:​ 31293525)]] Dias O, Saraiva J, Faria C, [[people:​ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #​0000FF>​iDS372,​ a phenotypically reconciled model for the metabolism of //​Streptococcus pneumoniae//​ strain R6</​fc>​. Front Microbiol 10:1283. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31293525|(PMID:​ 31293525)]]
  
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 Björnsdóttir ES, [[people:​emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #​0000FF>​Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</​fc>​. Pediatr Infect Dis J. 38:​620–624. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30299423|(PMID:​ 30299423)]] Björnsdóttir ES, [[people:​emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #​0000FF>​Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</​fc>​. Pediatr Infect Dis J. 38:​620–624. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30299423|(PMID:​ 30299423)]]
 +
 +Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2019. <fc #​0000FF>​A modified case definition to facilitate essential hospital care during Ebola outbreaks</​fc>​. Clin Infect Dis. 68:​1763–1768. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30239602|(PMID:​ 30239602)]]
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 +Hänscheid T, Grobusch MP. 2019. <fc #​0000FF>​Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</​fc>​ Travel Med Infect Dis. 28:104. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30030070|(PMID:​ 30030070)]]
 ===== 2018  ===== ===== 2018  =====
 Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:​jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #​0000FF>​First description of colistin and tigecycline-resistant //​Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</​fc>​. Antibiotics 7. [[https://​doi.org/​10.3390/​antibiotics7040096|doi:​10.3390/​antibiotics7040096]] [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30404152|(PMID:​ 30404152)]] Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:​jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #​0000FF>​First description of colistin and tigecycline-resistant //​Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</​fc>​. Antibiotics 7. [[https://​doi.org/​10.3390/​antibiotics7040096|doi:​10.3390/​antibiotics7040096]] [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30404152|(PMID:​ 30404152)]]
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 [[people:​cpato|Pato C]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #​0000FF>//​Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</​fc>​. Front Microbiol 9:​2372.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30356787|(PMID:​ 30356787)]] [[people:​cpato|Pato C]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #​0000FF>//​Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</​fc>​. Front Microbiol 9:​2372.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30356787|(PMID:​ 30356787)]]
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-Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2018. <fc #​0000FF>​A modified case definition to facilitate essential hospital care during Ebola outbreaks</​fc>​. Clin Infect Dis. //In press// [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30239602|(PMID:​ 30239602)]] [[https://​doi.org/​10.1093/​cid/​ciy798|doi:​10.1093/​cid/​ciy798]] 
  
 Branco A, [[people:​jmelocristino|Melo-Cristino J]]. 2018. <fc #​0000FF>​Extreme parasitemia in //P. falciparum//​ malaria</​fc>​. Blood 132:868. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30139832|(PMID:​ 30139832)]] Branco A, [[people:​jmelocristino|Melo-Cristino J]]. 2018. <fc #​0000FF>​Extreme parasitemia in //P. falciparum//​ malaria</​fc>​. Blood 132:868. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30139832|(PMID:​ 30139832)]]
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 Branco A, Francisco D, Hänscheid T. 2018. <fc #​0000FF>​Is there a “normal” oxygen concentration for in vitro //​Plasmodium//​ cultures?</​fc>​ Trends Parasitol 34:​811–812. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30049603|(PMID:​ 30049603)]] Branco A, Francisco D, Hänscheid T. 2018. <fc #​0000FF>​Is there a “normal” oxygen concentration for in vitro //​Plasmodium//​ cultures?</​fc>​ Trends Parasitol 34:​811–812. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30049603|(PMID:​ 30049603)]]
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- 
-Hänscheid T, Grobusch MP. 2018. <fc #​0000FF>​Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</​fc>​ Travel Med Infect Dis. //In press// [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30030070|(PMID:​ 30030070)]] 
  
 Couto N, Schuele L, Raangs EC, [[people:​mpmachado|Machado MP]], [[people:​cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:​ramirez|Ramirez M]],​[[people:​jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</​fc>​. Sci Rep. 2018 Sep 13;​8(1):​13767. doi: 10.1038/​s41598-018-31873-w.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30213965 |(PMID: 30213965)]] Couto N, Schuele L, Raangs EC, [[people:​mpmachado|Machado MP]], [[people:​cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:​ramirez|Ramirez M]],​[[people:​jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</​fc>​. Sci Rep. 2018 Sep 13;​8(1):​13767. doi: 10.1038/​s41598-018-31873-w.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30213965 |(PMID: 30213965)]]
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 Motro Y, [[people:​jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</​fc>​ Microbes Infect 20:​275–280. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29555344 |(PMID: 29555344)]] Motro Y, [[people:​jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</​fc>​ Microbes Infect 20:​275–280. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29555344 |(PMID: 29555344)]]
  
-Silva M, [[people:​mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:​ramirez|Ramirez M]], [[people:​jcarrico|Carriço JA]]. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</​fc>​ Microb Genom. ​2018 Mar 15. doi: 10.1099/​mgen.0.000166. ​[Epub ahead of print] ​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​29543149 |(PMID: 29543149)]]+Silva M, [[people:​mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:​ramirez|Ramirez M]], [[people:​jcarrico|Carriço JA]]. 2018. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</​fc>​ Microb Genom. ​4. doi: 10.1099/​mgen.0.000166. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29543149 |(PMID: 29543149)]]
  
 [[people:​jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:​bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</​fc>​ Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/​s13015-017-0119-7. eCollection 2018. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29467814 |(PMID: 29467814)]] ​ [[people:​jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:​bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</​fc>​ Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/​s13015-017-0119-7. eCollection 2018. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29467814 |(PMID: 29467814)]] ​
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