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publications [2019/07/16 02:29]
ramirez [2019]
publications [2024/02/13 16:00] (current)
ramirez [2024]
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 ====== Publications ====== ====== Publications ======
 +
 +===== 2024  =====
 +Mendes Pedro D, Paulo SE, Santos CM, Fonseca AB, [[people:​jmelocristino|Melo-Cristino J]], Pereira AA, Caneiras C. 2024. <fc #​0000FF>​Extensively drug-resistant //​Pseudomonas aeruginosa//:​ clinical features and treatment with ceftazidime/​avibactam and ceftolozane/​tazobactam in a tertiary care university hospital center in Portugal – A cross-sectional and retrospective observational study</​fc>​. Frontiers in Microbiology 15. //In press//
 +
 +Bajanca-Lavado MP, Pinto M, Carvalho MD, Jantarada Domingos G, [[people:​jmelocristino|Melo-Cristino J]]. 2024. <fc #​0000FF>​Rare serotype c //​Haemophilus influenzae//​ invasive isolate: characterization of the first case in Portugal</​fc>​. Eur J Clin Microbiol Infect Dis //In press// [[https://​www.ncbi.nlm.nih.gov/​pubmed/​38332396/​|(PMID:​ 38332396)]]
 +
 +[[people:​anacosta|Silva-Costa C]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M.]] 2024. <fc #​0000FF>//​Streptococcus pneumoniae//</​fc>,​ p. 1479–1490. In Tang, Y-W, Hindiyeh, MY, Liu, D, Sails, A, Spearman, P, Zhang, J-R (eds.), Molecular Medical Microbiology (Third Edition). Academic Press. [[https://​doi.org/​10.1016/​B978-0-12-818619-0.00095-2|doi:​10.1016/​B978-0-12-818619-0.00095-2]][[https://​www.sciencedirect.com/​science/​article/​abs/​pii/​B9780128186190000952
 +|Publisher site]]
 +===== 2023  =====
 +[[people:​anacosta|Silva-Costa C]], Gomes-Silva J, Santos A, [[people:​ramirez|Ramirez M]], [[people:​jmelocristino|Melo-Cristino J]], The Portuguese Group for the Study of Streptococcal Infections. 2023. <fc #​0000FF>​Adult non-invasive pneumococcal pneumonia in Portugal is dominated by serotype 3 and non-PCV13 serotypes 3-years after near universal PCV13 use in children</​fc>​. Frontiers in Public Health 11:1279656 [[https://​www.ncbi.nlm.nih.gov/​pubmed/​38186693/​|(PMID:​ 38186693)]]
 +
 +Mendes G, Santos ML, Ramalho JF, Bruschy-Fonseca A, Lito L, Mendes-Pedro D, Duarte A, [[people:​jmelocristino|Melo-Cristino J]], Caneiras C. 2023. <fc #​0000FF>​Genomic characterisation of a novel KPC-98-producing clinical //​Klebsiella pneumoniae//​ strain conferring resistance to ceftazidime/​avibactam</​fc>​. Int J Antimicrob Agents 62:107013. [[https://​www.ncbi.nlm.nih.gov/​pubmed/​37875180/​|(PMID:​ 37875180)]]
 +
 +Grobusch MP, Ruiz Del Portal Luyten C, Visser BJ, de Jong HK, Goorhuis A, Hanscheid T. 2023. <fc #​0000FF>​Overcoming publication and dissemination bias in infectious diseases clinical trials</​fc>​. Lancet Infect Dis S1473-3099(23)00455–3. [[https://​www.ncbi.nlm.nih.gov/​pubmed/​37837983/​|(PMID:​ 37837983)]]
 +
 +Gouveia C, Bajanca-Lavado MP, Mamede R, Araújo Carvalho A, Rodrigues F, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M.]], [[people:​afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections, ​ Portuguese Study Group of Pediatric Invasive Streptococcal Disease. 2023. <fc #​0000FF>​Sustained increase of paediatric invasive //​Streptococcus pyogenes// infections dominated by M1<​sub>​UK</​sub>​ and diverse //emm//12 isolates, Portugal, September 2022 to May 2023.</​fc>​ Eurosurveillance 28(36). [[https://​www.ncbi.nlm.nih.gov/​pubmed/​37676143/​|(PMID:​ 37676143)]]
 +
 +Xie O, Morris JM, Hayes AJ, Towers RJ, Jespersen MG, Lees JA, Zakour NLB, Berking O, Baines SL, Carter GP, Tonkin-Hill G, Schrieber L, McIntyre L, Lacey JA, James TB, Sriprakash KS, Beatson SA, Hasegawa T, Giffard P, Steer AC, Batzloff MR, Beall BW, Pinho MD, [[people:​ramirez|Ramirez M.]], Bessen DE, Dougan G, Bentley SD, Walker MJ, Currie BJ, Tong SYC, McMillan DJ, Davies MR. 2023. <fc #​0000FF>​Inter-species gene flow drives ongoing evolution of //​Streptococcus pyogenes// and //​Streptococcus dysgalactiae//​ subsp. //​equisimilis//</​fc>​. bioRxiv [[https://​doi.org/​10.1101/​2023.08.10.552873|(doi:​ 10.1101/​2023.08.10.552873)]].
 +
 +Pinto Junior VL, Valadas E, Hanscheid T. 2023. <fc #​0000FF>​Combating vaccine hesitancy requires knowledge of misfortunes and controversies</​fc>​. Acta Med Port 36:​537–540. [[https://​pubmed.ncbi.nlm.nih.gov/​37579748/​|(PMID:​ 37579748)]]
 +
 +Riche CVW, Cassol R, Falci DR, [[people:​ramirez|Ramirez M]], Dias CAG. 2023. <fc #​0000FF>​Epidemiology and risk factors for mortality among methicillin-resistant //​Staphylococcus aureus// bacteremic patients in Southern Brazil</​fc>​. PLoS One 18:​e0283774. [[https://​pubmed.ncbi.nlm.nih.gov/​37053222/​|(PMID:​ 37053222)]]
 +
 +Marinho PF, Vieira SL, Carvalho TG, Peleteiro MC, Hanscheid T. 2023. <fc #​0000FF>​A novel and simple heat-based method eliminates the highly detrimental effect of xylene deparaffinization on acid-fast stains</​fc>​. Am J Clin Pathol 160:​81–88. [[https://​pubmed.ncbi.nlm.nih.gov/​36897250/​|(PMID:​ 36897250)]]
 +
 +Bouchami O, Machado M, [[people:​jcarrico|Carriço JA]], [[people:​jmelocristino|Melo-Cristino J]], de Lencastre H, Miragaia M. 2023. <fc #​0000FF>​Spontaneous genomic variation as a survival strategy of nosocomial //​Staphylococcus haemolyticus//</​fc>​. Microbiol Spectr 11:​e0255222. [[https://​pubmed.ncbi.nlm.nih.gov/​36877037/​|(PMID:​ 36877037)]]
 +
 +Marinho PF, Hanscheid T. 2023. <fc #​0000FF>​A simple heat-based alternative method for deparaffinization of histological sections significantly improves acid-fast staining results for Mycobacteria in tissue</​fc>​. MethodsX 10:102079. [[https://​pubmed.ncbi.nlm.nih.gov/​36865652/​|(PMID:​ 36865652)]]
 +
 +Schnyder JL, de Jong HK, Bache EB, van Hest RM, Schlagenhauf P, Borrmann S, Hanscheid T, Grobusch MP. 2023. <fc #​0000FF>​On the potential for discontinuing atovaquone-proguanil (AP) ad-hoc post-exposure and other abbreviated AP-regimens:​ Pharmacology,​ pharmacokinetics and perspectives</​fc>​. Travel Med Infect Dis 52: //In press// [[https://​pubmed.ncbi.nlm.nih.gov/​36526126/​|(PMID:​ 36526126)]]
 +
 +===== 2022  =====
 +Mendes CI, Vila-Cerqueira P, Motro Y, Moran-Gilad J, [[people:​jcarrico|Carriço JA]], [[people:​ramirez|Ramirez M.]]. 2022. <fc #​0000FF>​LMAS:​ evaluating metagenomic short de novo assembly methods through defined communities</​fc>​. Gigascience 12:giac122. [[https://​pubmed.ncbi.nlm.nih.gov/​36576131/​|(PMID:​ 36576131)]]
 +
 +Kalkman LC, Hänscheid T, Krishna S, Grobusch MP. 2022. <fc #​0000FF>​Fluid therapy in sepsis? Pathogen-specific perspectives</​fc>​. New Microbes New Infect 49–50:​101035. [[https://​pubmed.ncbi.nlm.nih.gov/​36324876/​|(PMID:​ 36324876)]]
 +
 +Kalkman LC, Hanscheid T, Krishna S, Kremsner PG, Grobusch MP. 2022. <fc #​0000FF>​Antimalarial treatment in infants</​fc>​. Expert Opin Pharmacother 23:​1711–1726. [[https://​pubmed.ncbi.nlm.nih.gov/​36174125/​|(PMID:​ 36174125)]]
 +
 +Hernández-García M, García-Castillo M, [[people:​jmelocristino|Melo-Cristino J]], Pinto MF, Gonçalves E, Alves V, Vieira AR, Ramalheira E, Sancho L, Diogo J, Ferreira R, Cruz H, Chaves C, Bou G, Cercenado E, Delgado-Valverde M, Oliver A, Pitart C, Rodríguez-Lozano J, Tormo N, Díaz-Regañón J, Pássaro L, Duarte J, Cantón R, STEP and SUPERIOR study groups. 2022. <fc #​0000FF>​In vitro activity of imipenem/​relebactam against Pseudomonas aeruginosa isolates recovered from ICU patients in Spain and Portugal (SUPERIOR and STEP studies)</​fc>​. J Antimicrob Chemother 77:​3163–3172. [[https://​pubmed.ncbi.nlm.nih.gov/​36059128/​|(PMID:​ 36059128)]]
 +
 +Hernández-García M, García-Castillo M, Bou G, Cercenado E, Delgado-Valverde M, Oliver A, Pitart C, Rodríguez-Lozano J, Tormo N, [[people:​jmelocristino|Melo-Cristino J]], Pinto MF, Gonçalves E, Alves V, Vieira AR, Ramalheira E, Sancho L, Diogo J, Ferreira R, Cruz H, Chaves C, Duarte J, Pássaro L, Díaz-Regañón J, Cantón R. 2022. <fc #​0000FF>​Imipenem-Relebactam Susceptibility in Enterobacterales Isolates Recovered from ICU Patients from Spain and Portugal (SUPERIOR and STEP Studies)</​fc>​. Microbiol Spectr 10:​e0292722. [[https://​pubmed.ncbi.nlm.nih.gov/​36043877/​|(PMID:​ 36043877)]]
 +
 +[[people:​anacosta|Silva-Costa C]], Gomes-Silva J, [[people:​mdpinho|Pinho MD]], [[people:​afriaes|Friães A]], [[people:​ramirez|Ramirez M.]], [[people:​jmelocristino|Melo-Cristino J]]. 2022. <fc #​0000FF>​Continued Vaccine Breakthrough Cases of Serotype 3 Complicated Pneumonia in Vaccinated Children, Portugal (2016-2019)</​fc>​. Microbiol Spectr. 2022 Aug 31;​10(4):​e0107722.[[https://​pubmed.ncbi.nlm.nih.gov/​35862941/​|(PMID:​ 35862941)]]
 +
 +Mukherjee D, Chora ÂF, Lone J-C, Ramiro RS, Blankenhaus B, Serre K, [[people:​ramirez|Ramirez M.]], Gordo I, Veldhoen M, Varga-Weisz P, Mota MM. 2022. <fc #​0000FF>​lung microbiota promotes malaria-associated acute respiratory distress syndrome</​fc>​. Nat Commun 13:​3747.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​35768411/​|(PMID:​ 35768411)]]
 +
 +Schnyder JL, de Jong HK, Schlagenhauf P, Borrmann S, Hanscheid T, Grobusch MP. 2022. <fc #​0000FF>​Discontinuing atovaquone/​proguanil prophylaxis ad-hoc post-exposure and during-travel dose-sparing prophylactic regimens against //P. falciparum//​ malaria: An update with pointers for future research</​fc>​. Travel Med Infect Dis 49:102365. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​35661741/​|(PMID:​ 35661741)]]
 +
 +[[people:​emartins|Martins ER]], Nascimento do Ó D, Marques Costa AL, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M.]] 2022. <fc #​0000FF>​Characteristics of //​Streptococcus agalactiae//​ colonizing nonpregnant adults support the opportunistic nature of invasive infections</​fc>​. Microbiol Spectr 10:​e0108222. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​35604173/​|(PMID:​ 35604173)]]
 +
 +[[people:​afriaes|Friães A]], Mamede R, Ferreira M, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M.]] 2022. <fc #​0000FF>​Annotated whole-genome multilocus sequence typing schema for scalable high-resolution typing of //​Streptococcus pyogenes//</​fc>​. J Clin Microbiol 60:​e0031522. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​35531659/​|(PMID:​ 35531659)]]
 +
 +Elias R, Spadar A, Phelan J, [[people:​jmelocristino|Melo-Cristino J]], Lito L, Pinto M, Gonçalves L, Campino S, Clark TG, Duarte A, Perdigão J. 2022. <fc #​0000FF>​A phylogenomic approach for the analysis of colistin resistance-associated genes in //​Klebsiella pneumoniae//,​ its mutational diversity and implications for phenotypic resistance</​fc>​. Int J Antimicrob Agents 59:106581.
 +
 +Ricci ML, Fillo S, Ciammaruconi A, Lista F, Ginevra C, Jarraud S, Girolamo A, Barbanti F, Rota MC, Lindsay D, Gorzynski J, Uldum SA, Baig S, Foti M, Petralito G, Torri S, Faccini M, Bonini M, Gentili G, Senatore S, Lamberti A, [[people:​jcarrico|Carriço JA]], Scaturro M. 2022. <fc #​0000FF>​Genome analysis of //​Legionella pneumophila//​ ST23 from various countries reveals highly similar strains</​fc>​. Life Sci Alliance 5:​e202101117. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​35236759/​|(PMID:​ 35236759)]]
 +
 +Mendes G, Ramalho JF, Bruschy-Fonseca A, Lito L, Duarte A, [[people:​jmelocristino|Melo-Cristino J]], Caneiras C. 2022. <fc #​0000FF>​Whole-Genome Sequencing Enables Molecular Characterization of Non-Clonal Group 258 High-Risk Clones (ST13, ST17, ST147 and ST307) among Carbapenem-Resistant //​Klebsiella pneumoniae//​ from a Tertiary University Hospital Centre in Portugal</​fc>​. Microorganisms 10:416. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​35208876/​|(PMID:​ 35208876)]]
 +
 +Mendes G, Ramalho JF, Bruschy-Fonseca A, Lito L, Duarte A, [[people:​jmelocristino|Melo-Cristino J]], Caneiras C. 2022. <fc #​0000FF>​First Description of Ceftazidime/​Avibactam Resistance in a ST13 KPC-70-Producing //​Klebsiella pneumoniae//​ Strain from Portugal</​fc>​. Antibiotics (Basel) 11:167. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​35203770/​|(PMID:​ 35203770)]]
 +
 +Griffiths EJ, Timme RE, Mendes CI, Page AJ, Alikhan N-F, Fornika D, Maguire F, Campos J, Park D, Olawoye IB, Oluniyi PE, Anderson D, Christoffels A, da Silva AG, Cameron R, Dooley D, Katz LS, Black A, Karsch-Mizrachi I, Barrett T, Johnston A, Connor TR, Nicholls SM, Witney AA, Tyson GH, Tausch SH, Raphenya AR, Alcock B, Aanensen DM, Hodcroft E, Hsiao WWL, Vasconcelos ATR, MacCannell DR. 2022. <fc #​0000FF>​Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package</​fc>​. Gigascience 11:giac003 [[http://​www.ncbi.nlm.nih.gov/​pubmed/​35169842/​|(PMID:​ 35169842)]]
 +
 +Kalkman LC, Hänscheid T, Krishna S, Grobusch MP. 2022. <fc #​0000FF>​Fluid therapy for severe malaria</​fc>​. Lancet Infect Dis S1473-3099(21)00471–0. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​35051406/​|(PMID:​ 35051406)]]
 +
 +Barros Pinto MP, [[people:​jmelocristino|Melo-Cristino J]]. 2021. <fc #​0000FF>​Merozoites phagocytosed by neutrophils in //​Plasmodium falciparum//​ malaria</​fc>​. Br J Haematol 196:9  [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34371526/​|(PMID:​ 34371526)]]
 +
 +Pugliese CM, Adegbite BR, Edoa JR, Mombo-Ngoma G, Obone-Atome FA, Heuvelings CC, Bélard S, Kalkman LC, Leopold SJ, Hänscheid T, Adegnika AA, Huson MA, Grobusch MP. 2022. <fc #​0000FF>​Point-of-care ultrasound to assess volume status and pulmonary oedema in malaria patients</​fc>​. Infection 50:65–82. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34110570/​|(PMID:​ 34110570)]]
 +
 +van der Putten BCL , Mendes CI, Talbot BM, de Korne-Elenbaas J, Mamede R, Vila-Cerqueira P, Coelho LP, Gulvik CA​, Katz LS​, The ASM NGS 2020 Hackathon participants. 2022. <fc #​0000FF>​Software testing in microbial bioinformatics:​ a call to action</​fc>​. Microbial Genomics, Volume 8, Issue 3.[[https://​pubmed.ncbi.nlm.nih.gov/​35259087/​|(PMID:​ 35259087)]]
 +
 +===== 2021  =====
 +Elias R, [[people:​jmelocristino|Melo-Cristino J]], Lito L, Pinto M, Gonçalves L, Campino S, Clark TG, Duarte A, Perdigão J. 2021. <fc #​0000FF>//​Klebsiella pneumoniae//​ and colistin susceptibility testing: performance evaluation for broth microdilution,​ agar dilution and minimum inhibitory concentration test strips and impact of the “skipped well” phenomenon</​fc>​. Diagnostics 11:2352. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34943590/​|(PMID:​ 34943590)]]
 +
 +Adegbite BR, Edoa JR, Ndzebe Ndoumba WF, Dimessa Mbadinga LB, Mombo-Ngoma G, Jacob ST, Rylance J, Hänscheid T, Adegnika AA, Grobusch MP. 2021. <fc #​0000FF>​A comparison of different scores for diagnosis and mortality prediction of adults with sepsis in Low-and-Middle-Income Countries: a systematic review and meta-analysis</​fc>​. EClinicalMedicine 42:101184. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34765956/​|(PMID:​ 34765956)]]
 +
 +Freitas AT, Calhau C, Antunes G, Araújo B, Bandeira M, Barreira S, Bazenga F, Braz S, Caldeira D, Santos SCR, Faria A, Faria D, Fraga M, Nogueira-Garcia B, Gonçalves L, Kovalchuk P, Lacerda L, Lopes H, Luís D, Medeiros F, Melo AMP, [[people:​jmelocristino|Melo-Cristino J]], Miranda A, Pereira C, Pinto AT, Pinto J, Proença H, Ramos A, Rato JPR, Rocha F, Rocha JC, Moreira-Rosário A, Vazão H, Volovetska Y, Guimarães J-T, Pinto FJ. 2021. <fc #​0000FF>​Vitamin D-related polymorphisms and vitamin D levels as risk biomarkers of COVID-19 disease severity</​fc>​. Sci Rep 11:20837. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34675344/​|(PMID:​ 34675344)]]
 +
 +Baeringsdottir B, Erlendsdottir H, Bjornsdottir ES, [[people:​emartins|Martins ER]], [[people:​ramirez|Ramirez M]], Haraldsson A, Thorkelsson T. 2021. <fc #​0000FF>​Group B streptococcal infections in infants in Iceland: clinical and microbiological factors</​fc>​. J Med Microbiol 70:​001426 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34554080/​|(PMID:​ 34554080)]]
 +
 +[[people:​anacosta|Silva-Costa C]], Gomes-Silva J, Prados L, [[people:​ramirez|Ramirez M]], [[people:​jmelocristino|Melo-Cristino J]], on behalf of the Portuguese Group for the Study of Streptococcal Infections, the Portuguese Study Group of Invasive Pneumococcal Disease of the Pediatric Infectious Disease Society. 2021. <fc #​0000FF>​Pediatric invasive pneumococcal disease three years after PCV13 introduction in the national immunization plan - The continued importance of serotype 3</​fc>​. 7. Microorganisms 9:1428. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34361864/​|(PMID:​ 34361864)]]
 +
 +Hernández-García M, García-Fernández S, García-Castillo M, Pássaro L, Cantón R, STEP study group. 2021. <fc #​0000FF>​In vitro characterization of //​Pseudomonas aeruginosa//​ recovered in Portugal from low respiratory tract infections in ICU patients (STEP Study)</​fc>​. FEMS Microbiol Lett 368:​fnab099. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34347078/​|(PMID:​ 34347078)]]
 +
 +Grobusch MP, Schnyder J, Garcia-Garrido HM, Wisman JJ, Stijnis C, Goorhuis A, Hänscheid T, de Jong HK. 2021. <fc #​0000FF>​Delayed large local reaction to the adenovirus-vectored (ChAdOx1) vaccine</​fc>​. Travel Med Infect Dis 43:102093. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34102322/​|(PMID:​ 34102322)]]
 +
 +Silva L, Queirós C, Borges-Costa J, Barreto R, Filipe P, [[people:​jmelocristino|Melo-Cristino J]]. 2021. <fc #​0000FF>//​Chlamydia trachomatis//​ Infections in a Tertiary Care Portuguese Hospital: An 11-Year Retrospective Study</​fc>​. Actas Dermosifiliogr 112:​528–533. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34088478/​|(PMID:​ 34088478)]]
 +
 +[[people:​anacosta|Silva-Costa C]], Gomes-Silva J, Teodoro I, [[people:​ramirez|Ramirez M]], [[people:​jmelocristino|Melo-Cristino J]], on behalf of the Portuguese Group for the Study of Streptococcal Infections. 2021. <fc #​0000FF>​Invasive Pneumococcal Disease in Adults in Portugal: The Importance of Serotypes 8 and 3 (2015–2018)</​fc>​. 5. Microorganisms 9:1016. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​34066862/​|(PMID:​ 34066862)]]
 +
 +Mäesaar M, Mamede R, Elias T, Roasto M. 2021. <fc #​0000FF>​Retrospective Use of Whole-Genome Sequencing Expands the Multicountry Outbreak Cluster of //Listeria monocytogenes//​ ST1247</​fc>​. Int J Genomics 2021:​6636138. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33869622/​|(PMID:​ 33869622)]]
 +
 +Grobusch MP, Hanscheid T. 2021. <fc #​0000FF>​Dracunculiasis X in Vietnam: Emerging public health threat or exotic gem?</​fc>​ Int J Infect Dis 105:​416–417. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33610782/​|(PMID:​ 33610782)]]
 +
 +Mendes Pedro D, Mendes Pedro MM, Valadas E, Hanscheid T. 2021. <fc #​0000FF>​SARS-CoV-2 and Cancer: Beyond Immunosuppression</​fc>​. Acta Med Port 34:237. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33480839/​|(PMID:​ 33480839)]]
 +
 +Hernández-García M, García-Fernández S, García-Castillo M, [[people:​jmelocristino|Melo-Cristino J]], Pinto MF, Gonçalves E, Alves V, Costa E, Ramalheira E, Sancho L, Diogo J, Ferreira R, Silva T, Chaves C, Pássaro L, Paixão L, Romano J, Cantón R, STEP study group. 2021. <fc #​0000FF>​Confronting ceftolozane-tazobactam susceptibility in multidrug-resistant Enterobacterales isolates and whole-genome sequencing results (STEP Study)</​fc>​. Int J Antimicrob Agents 57:106259. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33310115/​|(PMID:​ 33310115)]]
 +
 +Hernández-García M, García-Castillo M, García-Fernández S, [[people:​jmelocristino|Melo-Cristino J]], Pinto MF, Gonçalves E, Alves V, Vieira AR, Ramalheira E, Sancho L, Diogo J, Ferreira R, Silva T, Chaves C, Bou G, Cercenado E, Delgado-Valverde M, Oliver A, Pitart C, Rodríguez-Lozano J, Tormo N, Romano J, Pássaro L, Paixão L, López-Mendoza D, Díaz-Regañón J, Cantón R, STEP and SUPERIOR study groups. 2021. <fc #​0000FF>​Distinct epidemiology and resistance mechanisms affecting ceftolozane/​tazobactam in Pseudomonas aeruginosa isolates recovered from ICU patients in Spain and Portugal depicted by WGS</​fc>​. J Antimicrob Chemother 76:​370–379. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33099623|(PMID:​ 33099623)]]
 +
 +Mamede R, Vila-Cerqueira P, Silva M, [[people:​jcarrico|Carriço JA]], [[people:​ramirez|Ramirez M]]. 2021. <fc #​0000FF>​Chewie Nomenclature Server (chewie-NS):​ a deployable nomenclature server for easy sharing of core and whole genome MLST schemas</​fc>​. Nucleic Acids Res 49:​D660–D666. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33068420|(PMID:​ 33068420)]]
 +
 +Queirós C, Borges da Costa J, Lito L, Filipe P, [[people:​jmelocristino|Melo-Cristino J]]. 2020. <fc #​0000FF>​Gonorrhea in a tertiary care Portuguese hospital: a 10-year retrospective study of the evolution of cases and drug resistance of the isolates</​fc>​. Actas Dermosifiliogr 111:​761–767. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32997962|(PMID:​ 32997962)]]
 +
 +Barros Pinto MP, Marques G, [[people:​jmelocristino|Melo-Cristino J]]. 2021 <fc #​0000FF>​Promastigotes of //​Leishmania//​ spp. developing in human bone marrow in vitro</​fc>​. Br J Haematol 192:7. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32945533|(PMID:​ 32945533)]]
 +
 +Vaz C, Nascimento M, [[people:​jcarrico|Carriço JA]], Rocher T, Francisco AP. 2020. <fc #​0000FF>​Distance-based phylogenetic inference from typing data: a unifying view</​fc>​. Brief Bioinformatics 22:bbaa147. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32734294|(PMID:​ 32734294)]]
 +===== 2020  =====
 +Utzinger KS, Held U, Hänscheid T, Gültekin N, Fehr J, Grobusch MP, Schlagenhauf P. 2020. <fc #​0000FF>​Self-diagnosis and self-treatment of //​Plasmodium//​ spp. infection by travellers (1989-2019):​ A systematic review and meta-analysis</​fc>​. Travel Med Infect Dis 38:101902. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33132136|(PMID:​ 33132136)]]
 +
 +Figueiredo-Campos P, Blankenhaus B, Mota C, Gomes A, Serrano M, Ariotti S, Costa C, Nunes-Cabaço H, Mendes AM, Gaspar P, Pereira-Santos MC, Rodrigues F, Condeço J, Escoval MA, Santos M, [[people:​ramirez|Ramirez M]], [[people:​jmelocristino|Melo-Cristino J]], Simas JP, Vasconcelos E, Afonso Â, Veldhoen M. 2020. <fc #​0000FF>​Seroprevalence of anti-SARS-CoV-2 antibodies in COVID-19 patients and healthy volunteers up to six months post disease onset</​fc>​. Eur J Immunol 50:​2025–2040. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​33084029|(PMID:​ 33084029)]]
 +
 +Dubbink JH, Branco TM, Kamara KB, Bangura JS, Wehrens E, Falama AM, Goorhuis A, Jørgensen PB, Sevalie SS, Hänscheid T, Grobusch MP. 2020. <fc #​0000FF>​COVID-19 treatment in sub-Saharan Africa: If the best is not available, the available becomes the best</​fc>​. Travel Med Infect Dis 37:101878. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32927051|(PMID:​ 32927051)]]
 +
 +Pinto MPB, [[people:​jmelocristino|Melo-Cristino J]]. <fc #​0000FF>​Sporogonic cycle of //​Plasmodium falciparum//​ in a human blood. sample</​fc>​ Am J Hematol //In press//. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32857861|(PMID:​ 32857861)]]
 +
 +Pinto M, Rodrigues JC, Matias R, Água-Doce I, Cordeiro D, Correia C, Gomes JP, Borrego MJ, PTGonoNet. 2020. <fc #​0000FF>​Fifteen years of a nationwide culture collection of //Neisseria gonorrhoeae//​ antimicrobial resistance in Portugal</​fc>​. Eur J Clin Microbiol Infect Dis 39:​1761–1770. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32494956|(PMID:​ 32494956)]]
 +
 +Grobusch MP, van der Fluit KS, Stijnis C, De Pijper CA, Hänscheid T, Gautret P, Schlagenhauf P, Goorhuis A. 2020. <fc #​0000FF>​Can dengue virus be sexually transmitted?</​fc>​ Travel Med Infect Dis 101753. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32473313|(PMID:​ 32473313)]]
 +
 +García-Fernández S, García-Castillo M, [[people:​jmelocristino|Melo-Cristino J]], Pinto MF, Gonçalves E, Alves V, Vieira AR, Ramalheira E, Sancho L, Diogo J, Ferreira R, Silva D, Chaves C, Pássaro L, Paixão L, Cantón R, STEP Study Group. 2020. <fc #​0000FF>​In vitro activity of ceftolozane-tazobactam against //​Enterobacterales//​ and //​Pseudomonas aeruginosa//​ causing urinary, intra-abdominal and lower respiratory tract infections in intensive care units in Portugal: The STEP multicenter study</​fc>​. Int J Antimicrob Agents 55:105887. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31926283|(PMID:​ 31926283)]]
 +
 +González-Díaz A, [[people:​mpmachado|Machado MP]], Càmara J, Yuste J, Varon E, Domenech M, Del Grosso M, Marimón JM, Cercenado E, Larrosa N, Quesada MD, Fontanals D, El-Mniai A, Cubero M, [[people:​jcarrico|Carriço JA]], Martí S, [[people:​ramirez|Ramirez M]], Ardanuy C. 2020. <fc #​0000FF>​Two multi-fragment recombination events resulted in the β-lactam-resistant serotype 11A-ST6521 related to Spain9V-ST156 pneumococcal clone spreading in south-western Europe, 2008 to 2016</​fc>​. Euro Surveill 25:​pii=1900457.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​32347199|(PMID:​ 32347199)]]
 +
 +[[people:​cmendes|Mendes CI]],​Lizarazo E, [[people:​mpmachado|Machado MP]], Silva DN, Tami A, [[people:​ramirez|Ramirez M]], Couto N, Rossen JWA, [[people:​jcarrico|Carriço JA]]. 2020. <fc #​0000FF>​DEN-IM:​ dengue virus genotyping from amplicon and shotgun metagenomic sequencing</​fc>​. Microb Genom 6:e000328. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32134380|(PMID:​ 32134380)]]
 +
 +Hänscheid T, Valadas E, Grobusch MP. 2020. <fc #​0000FF>​Coronavirus 2019-nCoV: Is the genie already out of the bottle?</​fc>​ Travel Med Infect Dis 101577. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32044388|(PMID:​ 32044388)]]
 +
 +Hänscheid T, Vieira S, Ferreira P, Carvalho T, Belo S, Grobusch MP. 2020. <fc #​0000FF>​The fluorescent acid-fast stain, auramine-O, stains schistosome eggs and may be an aid for detection. An old technique with a useful future?</​fc>​ Travel Med Infect Dis 35:101569. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​32006658|(PMID:​ 32006658)]]
 +
 +Xavier BB, Mysara M, Bolzan M, [[people:​bgoncalves|Ribeiro-Gonçalves B]], Alako BTF, Harrison P, Lammens C, Kumar-Singh S, Goossens H, [[people:​jcarrico|Carriço JA]], Cochrane G, Malhotra-Kumar S. 2020. <fc #​0000FF>​Bacpipe:​ a rapid, user-friendly whole-genome sequencing pipeline for clinical diagnostic bacteriology</​fc>​. iScience 23:100769. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31887656|(PMID:​ 31887656)]]
 +
 +van der Linden M, Mamede R, Levina N, Helwig P, Vila-Cerqueira P, [[people:​jcarrico|Carriço JA]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​emartins|Martins ER]]. 2020. <fc #​0000FF>​Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany</​fc>​. J Antimicrob Chemother. 75:​296–299. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31740946|(PMID:​ 31740946)]]
 +
 +Hänscheid T, Grobusch MP. 2020. <fc #​0000FF>​Coenzyme Q10 and cerebral malaria in mice: Questionable interpretations,​ improbable usefulness in humans</​fc>​. Parasitol Int 74:101969. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31421269|(PMID:​ 31421269)]]
  
 ===== 2019  ===== ===== 2019  =====
 +[[people:​afriaes|Friães A]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Portuguese Group for the Study of Streptococcal Infections. 2019. <fc #​0000FF>​Changes in //emm// types and superantigen gene content of //​Streptococcus pyogenes// causing invasive infections in Portugal</​fc>​. Sci Rep 9:18051. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31792274|(PMID:​ 31792274)]]
 +
 +Hänscheid T, Schlagenhauf P, Grobusch MP. 2019. <fc #​0000FF>​Atovaquone/​proguanil for malaria chemoprophylaxis - Could a difference in susceptibility during hepatic development explain the need to continue drug intake for 7 days post-exposure?</​fc>​ Travel Med Infect Dis 101527. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31759143|(PMID:​ 31759143)]]
 +
 +Duque-Valencia J, Forero-Muñoz NR, Díaz FJ, [[people:​emartins|Martins E]], Barato P, Ruiz-Saenz J. 2019. <fc #​0000FF>​Phylogenetic evidence of the intercontinental circulation of a canine distemper virus lineage in the Americas</​fc>​. Sci Rep 9:15747. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31673120|(PMID:​ 31673120)]]
 +
 +Fleres G, Couto N, Schuele L, Chlebowicz M A, [[people:​cmendes|Mendes C I]], van der Sluis L W M, Rossen J W A, Friedrich A W, García-Cobos S. 2019. <fc #​0000FF>​Detection of a novel //mcr-5.4// gene variant in hospital tap water by shotgun metagenomic sequencing</​fc>​. J Antimicrob Chemother 74: 3626–3628 [[https://​www.ncbi.nlm.nih.gov/​pubmed/​31504580|(PMID:​ 31504580)]]
 +
 +Espadinha D, Sobral R G, [[people:​cmendes|Mendes C I]], Méric G, Sheppard S K, [[people:​jcarrico|Carriço JA]], de Lencastre H, Miragaia M. 2019. <fc #​0000FF>​Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of // Staphylococcus epidermidis//​ Clonal Lineages</​fc>​. Front Microbiol 10: 1971. [[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC6719527/​|(PMID:​ 31507574)]]
 +
 Dias O, Saraiva J, Faria C, [[people:​ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #​0000FF>​iDS372,​ a phenotypically reconciled model for the metabolism of //​Streptococcus pneumoniae//​ strain R6</​fc>​. Front Microbiol 10:1283. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31293525|(PMID:​ 31293525)]] Dias O, Saraiva J, Faria C, [[people:​ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #​0000FF>​iDS372,​ a phenotypically reconciled model for the metabolism of //​Streptococcus pneumoniae//​ strain R6</​fc>​. Front Microbiol 10:1283. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31293525|(PMID:​ 31293525)]]
  
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 Björnsdóttir ES, [[people:​emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #​0000FF>​Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</​fc>​. Pediatr Infect Dis J. 38:​620–624. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30299423|(PMID:​ 30299423)]] Björnsdóttir ES, [[people:​emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #​0000FF>​Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</​fc>​. Pediatr Infect Dis J. 38:​620–624. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30299423|(PMID:​ 30299423)]]
 +
 +Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2019. <fc #​0000FF>​A modified case definition to facilitate essential hospital care during Ebola outbreaks</​fc>​. Clin Infect Dis. 68:​1763–1768. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30239602|(PMID:​ 30239602)]]
 +
 +Hänscheid T, Grobusch MP. 2019. <fc #​0000FF>​Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</​fc>​ Travel Med Infect Dis. 28:104. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30030070|(PMID:​ 30030070)]]
 ===== 2018  ===== ===== 2018  =====
 Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:​jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #​0000FF>​First description of colistin and tigecycline-resistant //​Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</​fc>​. Antibiotics 7. [[https://​doi.org/​10.3390/​antibiotics7040096|doi:​10.3390/​antibiotics7040096]] [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30404152|(PMID:​ 30404152)]] Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:​jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #​0000FF>​First description of colistin and tigecycline-resistant //​Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</​fc>​. Antibiotics 7. [[https://​doi.org/​10.3390/​antibiotics7040096|doi:​10.3390/​antibiotics7040096]] [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30404152|(PMID:​ 30404152)]]
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 [[people:​cpato|Pato C]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #​0000FF>//​Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</​fc>​. Front Microbiol 9:​2372.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30356787|(PMID:​ 30356787)]] [[people:​cpato|Pato C]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #​0000FF>//​Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</​fc>​. Front Microbiol 9:​2372.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30356787|(PMID:​ 30356787)]]
- 
-Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2018. <fc #​0000FF>​A modified case definition to facilitate essential hospital care during Ebola outbreaks</​fc>​. Clin Infect Dis. //In press// [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30239602|(PMID:​ 30239602)]] [[https://​doi.org/​10.1093/​cid/​ciy798|doi:​10.1093/​cid/​ciy798]] 
  
 Branco A, [[people:​jmelocristino|Melo-Cristino J]]. 2018. <fc #​0000FF>​Extreme parasitemia in //P. falciparum//​ malaria</​fc>​. Blood 132:868. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30139832|(PMID:​ 30139832)]] Branco A, [[people:​jmelocristino|Melo-Cristino J]]. 2018. <fc #​0000FF>​Extreme parasitemia in //P. falciparum//​ malaria</​fc>​. Blood 132:868. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30139832|(PMID:​ 30139832)]]
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 Branco A, Francisco D, Hänscheid T. 2018. <fc #​0000FF>​Is there a “normal” oxygen concentration for in vitro //​Plasmodium//​ cultures?</​fc>​ Trends Parasitol 34:​811–812. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30049603|(PMID:​ 30049603)]] Branco A, Francisco D, Hänscheid T. 2018. <fc #​0000FF>​Is there a “normal” oxygen concentration for in vitro //​Plasmodium//​ cultures?</​fc>​ Trends Parasitol 34:​811–812. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30049603|(PMID:​ 30049603)]]
- 
- 
-Hänscheid T, Grobusch MP. 2018. <fc #​0000FF>​Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</​fc>​ Travel Med Infect Dis. //In press// [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30030070|(PMID:​ 30030070)]] 
  
 Couto N, Schuele L, Raangs EC, [[people:​mpmachado|Machado MP]], [[people:​cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:​ramirez|Ramirez M]],​[[people:​jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</​fc>​. Sci Rep. 2018 Sep 13;​8(1):​13767. doi: 10.1038/​s41598-018-31873-w.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30213965 |(PMID: 30213965)]] Couto N, Schuele L, Raangs EC, [[people:​mpmachado|Machado MP]], [[people:​cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:​ramirez|Ramirez M]],​[[people:​jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</​fc>​. Sci Rep. 2018 Sep 13;​8(1):​13767. doi: 10.1038/​s41598-018-31873-w.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30213965 |(PMID: 30213965)]]
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 Motro Y, [[people:​jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</​fc>​ Microbes Infect 20:​275–280. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29555344 |(PMID: 29555344)]] Motro Y, [[people:​jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</​fc>​ Microbes Infect 20:​275–280. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29555344 |(PMID: 29555344)]]
  
-Silva M, [[people:​mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:​ramirez|Ramirez M]], [[people:​jcarrico|Carriço JA]]. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</​fc>​ Microb Genom. ​2018 Mar 15. doi: 10.1099/​mgen.0.000166. ​[Epub ahead of print] ​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​29543149 |(PMID: 29543149)]]+Silva M, [[people:​mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:​ramirez|Ramirez M]], [[people:​jcarrico|Carriço JA]]. 2018. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</​fc>​ Microb Genom. ​4. doi: 10.1099/​mgen.0.000166. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29543149 |(PMID: 29543149)]]
  
 [[people:​jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:​bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</​fc>​ Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/​s13015-017-0119-7. eCollection 2018. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29467814 |(PMID: 29467814)]] ​ [[people:​jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:​bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</​fc>​ Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/​s13015-017-0119-7. eCollection 2018. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29467814 |(PMID: 29467814)]] ​
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 Pinto, F. R., J. Melo-Cristino,​ and [[people:​ramirez|M. Ramirez]]. 2008. <fc #​0000FF>​A confidence interval for the Wallace coefficient of concordance and its application to microbial typing methods</​fc>​. PLoS ONE 3:e3696. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19002246|(PMID:​ 19002246)]] Pinto, F. R., J. Melo-Cristino,​ and [[people:​ramirez|M. Ramirez]]. 2008. <fc #​0000FF>​A confidence interval for the Wallace coefficient of concordance and its application to microbial typing methods</​fc>​. PLoS ONE 3:e3696. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19002246|(PMID:​ 19002246)]]
  
-Aguiar, S. I., I. Serrano, F. R. Pinto, J. Melo-Cristino,​ [[people:​ramirez|M. Ramirez]], and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Changes in pneumococcal ​invasive disease with non-universal vaccination coverage of the seven-valent conjugate vaccine</​fc>​. Clin. Microbiol. Infect. 14:835-843. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​18844684|(PMID:​ 18844684)]]+Aguiar, S. I., I. Serrano, F. R. Pinto, J. Melo-Cristino,​ [[people:​ramirez|M. Ramirez]], and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Changes in //​Streptococcus pneumoniae//​ serotypes causing ​invasive disease with non-universal vaccination coverage of the seven-valent conjugate vaccine</​fc>​. Clin. Microbiol. Infect. 14:835-843. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​18844684|(PMID:​ 18844684)]]
  
 Silva-Costa,​ C., F. R. Pinto, [[people:​ramirez|M. Ramirez]], J. Melo-Cristino,​ and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Decrease in macrolide resistance and clonal instability among //​Streptococcus pyogenes// in Portugal</​fc>​. Clin. Microbiol. Infect. 14:​1152-1159. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19046174|(PMID:​ 19046174)]] Silva-Costa,​ C., F. R. Pinto, [[people:​ramirez|M. Ramirez]], J. Melo-Cristino,​ and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Decrease in macrolide resistance and clonal instability among //​Streptococcus pyogenes// in Portugal</​fc>​. Clin. Microbiol. Infect. 14:​1152-1159. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19046174|(PMID:​ 19046174)]]
  • publications.1563236999.txt.gz
  • Last modified: 2019/07/16 02:29
  • by ramirez