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publications [2019/07/09 10:32]
ramirez [2019]
publications [2019/11/04 18:00] (current)
ramirez [2019]
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 ===== 2019  ===== ===== 2019  =====
 +Duque-Valencia J, Forero-Muñoz NR, Díaz FJ, [[people:​emartins|Martins E]], Barato P, Ruiz-Saenz J. 2019. <fc #​0000FF>​Phylogenetic evidence of the intercontinental circulation of a canine distemper virus lineage in the Americas</​fc>​. Sci Rep 9:15747. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31673120|(PMID:​ 31673120)]]
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 +Hänscheid T, Grobusch MP. 2019. <fc #​0000FF>​Coenzyme Q10 and cerebral malaria in mice: Questionable interpretations,​ improbable usefulness in humans</​fc>​. Parasitol Int //In press//. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31421269|(PMID:​ 31421269)]]
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 +Dias O, Saraiva J, Faria C, [[people:​ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #​0000FF>​iDS372,​ a phenotypically reconciled model for the metabolism of //​Streptococcus pneumoniae//​ strain R6</​fc>​. Front Microbiol 10:1283. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31293525|(PMID:​ 31293525)]]
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 Barkham T, Zadoks RN, Azmai MNA, Baker S, Bich VTN, Chalker V, Chau ML, Dance D, Deepak RN, van Doorn HR, Gutierrez RA, Holmes MA, Huong LNP, Koh TH, [[people:​emartins|Martins E]], Mehershahi K, Newton P, Ng LC, Phuoc NN, Sangwichian O, Sawatwong P, Surin U, Tan TY, Tang WY, Thuy NV, Turner P, Vongsouvath M, Zhang D, Whistler T, Chen SL. 2019. <fc #​0000FF>​One hypervirulent clone, sequence type 283, accounts for a large proportion of invasive //​Streptococcus agalactiae//​ isolated from humans and diseased tilapia in Southeast Asia</​fc>​. PLoS Negl Trop Dis 13:​e0007421. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31246981|(PMID:​ 31246981)]] Barkham T, Zadoks RN, Azmai MNA, Baker S, Bich VTN, Chalker V, Chau ML, Dance D, Deepak RN, van Doorn HR, Gutierrez RA, Holmes MA, Huong LNP, Koh TH, [[people:​emartins|Martins E]], Mehershahi K, Newton P, Ng LC, Phuoc NN, Sangwichian O, Sawatwong P, Surin U, Tan TY, Tang WY, Thuy NV, Turner P, Vongsouvath M, Zhang D, Whistler T, Chen SL. 2019. <fc #​0000FF>​One hypervirulent clone, sequence type 283, accounts for a large proportion of invasive //​Streptococcus agalactiae//​ isolated from humans and diseased tilapia in Southeast Asia</​fc>​. PLoS Negl Trop Dis 13:​e0007421. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31246981|(PMID:​ 31246981)]]
  
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 Motro Y, [[people:​jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</​fc>​ Microbes Infect 20:​275–280. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29555344 |(PMID: 29555344)]] Motro Y, [[people:​jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</​fc>​ Microbes Infect 20:​275–280. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29555344 |(PMID: 29555344)]]
  
-Silva M, [[people:​mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:​ramirez|Ramirez M]], [[people:​jcarrico|Carriço JA]]. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</​fc>​ Microb Genom. ​2018 Mar 15. doi: 10.1099/​mgen.0.000166. ​[Epub ahead of print] ​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​29543149 |(PMID: 29543149)]]+Silva M, [[people:​mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:​ramirez|Ramirez M]], [[people:​jcarrico|Carriço JA]]. 2018. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</​fc>​ Microb Genom. ​4. doi: 10.1099/​mgen.0.000166. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29543149 |(PMID: 29543149)]]
  
 [[people:​jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:​bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</​fc>​ Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/​s13015-017-0119-7. eCollection 2018. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29467814 |(PMID: 29467814)]] ​ [[people:​jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:​bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</​fc>​ Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/​s13015-017-0119-7. eCollection 2018. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29467814 |(PMID: 29467814)]] ​
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 Pinto, F. R., J. Melo-Cristino,​ and [[people:​ramirez|M. Ramirez]]. 2008. <fc #​0000FF>​A confidence interval for the Wallace coefficient of concordance and its application to microbial typing methods</​fc>​. PLoS ONE 3:e3696. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19002246|(PMID:​ 19002246)]] Pinto, F. R., J. Melo-Cristino,​ and [[people:​ramirez|M. Ramirez]]. 2008. <fc #​0000FF>​A confidence interval for the Wallace coefficient of concordance and its application to microbial typing methods</​fc>​. PLoS ONE 3:e3696. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19002246|(PMID:​ 19002246)]]
  
-Aguiar, S. I., I. Serrano, F. R. Pinto, J. Melo-Cristino,​ [[people:​ramirez|M. Ramirez]], and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Changes in pneumococcal ​invasive disease with non-universal vaccination coverage of the seven-valent conjugate vaccine</​fc>​. Clin. Microbiol. Infect. 14:835-843. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​18844684|(PMID:​ 18844684)]]+Aguiar, S. I., I. Serrano, F. R. Pinto, J. Melo-Cristino,​ [[people:​ramirez|M. Ramirez]], and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Changes in //​Streptococcus pneumoniae//​ serotypes causing ​invasive disease with non-universal vaccination coverage of the seven-valent conjugate vaccine</​fc>​. Clin. Microbiol. Infect. 14:835-843. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​18844684|(PMID:​ 18844684)]]
  
 Silva-Costa,​ C., F. R. Pinto, [[people:​ramirez|M. Ramirez]], J. Melo-Cristino,​ and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Decrease in macrolide resistance and clonal instability among //​Streptococcus pyogenes// in Portugal</​fc>​. Clin. Microbiol. Infect. 14:​1152-1159. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19046174|(PMID:​ 19046174)]] Silva-Costa,​ C., F. R. Pinto, [[people:​ramirez|M. Ramirez]], J. Melo-Cristino,​ and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Decrease in macrolide resistance and clonal instability among //​Streptococcus pyogenes// in Portugal</​fc>​. Clin. Microbiol. Infect. 14:​1152-1159. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19046174|(PMID:​ 19046174)]]
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  • by ramirez