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publications [2019/08/01 16:29] jcarrico [2008] |
publications [2020/01/21 10:37] ramirez [2019] |
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====== Publications ====== | ====== Publications ====== | ||
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+ | ===== 2020 ===== | ||
+ | Hänscheid T, Grobusch MP. 2020. <fc #0000FF>Coenzyme Q10 and cerebral malaria in mice: Questionable interpretations, improbable usefulness in humans</fc>. Parasitol Int 74:101969. [[http://www.ncbi.nlm.nih.gov/pubmed/31421269|(PMID: 31421269)]] | ||
===== 2019 ===== | ===== 2019 ===== | ||
+ | [[people:afriaes|Friães A]], [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], Portuguese Group for the Study of Streptococcal Infections. 2019. <fc #0000FF>Changes in //emm// types and superantigen gene content of //Streptococcus pyogenes// causing invasive infections in Portugal</fc>. Sci Rep 9:18051. [[http://www.ncbi.nlm.nih.gov/pubmed/31792274|(PMID: 31792274)]] | ||
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+ | Hänscheid T, Schlagenhauf P, Grobusch MP. 2019. Atovaquone/proguanil for malaria chemoprophylaxis - Could a difference in susceptibility during hepatic development explain the need to continue drug intake for 7 days post-exposure? Travel Med Infect Dis 101527. [[http://www.ncbi.nlm.nih.gov/pubmed/31759143|(PMID: 31759143)]] | ||
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+ | Duque-Valencia J, Forero-Muñoz NR, Díaz FJ, [[people:emartins|Martins E]], Barato P, Ruiz-Saenz J. 2019. <fc #0000FF>Phylogenetic evidence of the intercontinental circulation of a canine distemper virus lineage in the Americas</fc>. Sci Rep 9:15747. [[http://www.ncbi.nlm.nih.gov/pubmed/31673120|(PMID: 31673120)]] | ||
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+ | Fleres G, Couto N, Schuele L, Chlebowicz M A, [[people:cmendes|Mendes C I]], van der Sluis L W M, Rossen J W A, Friedrich A W, García-Cobos S. 2019. <fc #0000FF>Detection of a novel //mcr-5.4// gene variant in hospital tap water by shotgun metagenomic sequencing</fc>. J Antimicrob Chemother 74: 3626–3628 [[https://www.ncbi.nlm.nih.gov/pubmed/31504580|(PMID: 31504580)]] | ||
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+ | Espadinha D, Sobral R G, [[people:cmendes|Mendes C I]], Méric G, Sheppard S K, [[people:jcarrico|Carriço JA]], de Lencastre H, Miragaia M. 2019. <fc #0000FF>Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of // Staphylococcus epidermidis// Clonal Lineages</fc>. Front Microbiol 10: 1971. [[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6719527/|(PMID: 31507574)]] | ||
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Dias O, Saraiva J, Faria C, [[people:ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #0000FF>iDS372, a phenotypically reconciled model for the metabolism of //Streptococcus pneumoniae// strain R6</fc>. Front Microbiol 10:1283. [[http://www.ncbi.nlm.nih.gov/pubmed/31293525|(PMID: 31293525)]] | Dias O, Saraiva J, Faria C, [[people:ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #0000FF>iDS372, a phenotypically reconciled model for the metabolism of //Streptococcus pneumoniae// strain R6</fc>. Front Microbiol 10:1283. [[http://www.ncbi.nlm.nih.gov/pubmed/31293525|(PMID: 31293525)]] | ||
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Björnsdóttir ES, [[people:emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #0000FF>Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</fc>. Pediatr Infect Dis J. 38:620–624. [[http://www.ncbi.nlm.nih.gov/pubmed/30299423|(PMID: 30299423)]] | Björnsdóttir ES, [[people:emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #0000FF>Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</fc>. Pediatr Infect Dis J. 38:620–624. [[http://www.ncbi.nlm.nih.gov/pubmed/30299423|(PMID: 30299423)]] | ||
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+ | Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2019. <fc #0000FF>A modified case definition to facilitate essential hospital care during Ebola outbreaks</fc>. Clin Infect Dis. 68:1763–1768. [[http://www.ncbi.nlm.nih.gov/pubmed/30239602|(PMID: 30239602)]] | ||
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+ | Hänscheid T, Grobusch MP. 2019. <fc #0000FF>Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</fc> Travel Med Infect Dis. 28:104. [[http://www.ncbi.nlm.nih.gov/pubmed/30030070|(PMID: 30030070)]] | ||
===== 2018 ===== | ===== 2018 ===== | ||
Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #0000FF>First description of colistin and tigecycline-resistant //Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</fc>. Antibiotics 7. [[https://doi.org/10.3390/antibiotics7040096|doi:10.3390/antibiotics7040096]] [[http://www.ncbi.nlm.nih.gov/pubmed/30404152|(PMID: 30404152)]] | Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #0000FF>First description of colistin and tigecycline-resistant //Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</fc>. Antibiotics 7. [[https://doi.org/10.3390/antibiotics7040096|doi:10.3390/antibiotics7040096]] [[http://www.ncbi.nlm.nih.gov/pubmed/30404152|(PMID: 30404152)]] | ||
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[[people:cpato|Pato C]], [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], [[people:afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #0000FF>//Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</fc>. Front Microbiol 9:2372.[[http://www.ncbi.nlm.nih.gov/pubmed/30356787|(PMID: 30356787)]] | [[people:cpato|Pato C]], [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], [[people:afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #0000FF>//Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</fc>. Front Microbiol 9:2372.[[http://www.ncbi.nlm.nih.gov/pubmed/30356787|(PMID: 30356787)]] | ||
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- | Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2018. <fc #0000FF>A modified case definition to facilitate essential hospital care during Ebola outbreaks</fc>. Clin Infect Dis. //In press// [[http://www.ncbi.nlm.nih.gov/pubmed/30239602|(PMID: 30239602)]] [[https://doi.org/10.1093/cid/ciy798|doi:10.1093/cid/ciy798]] | ||
Branco A, [[people:jmelocristino|Melo-Cristino J]]. 2018. <fc #0000FF>Extreme parasitemia in //P. falciparum// malaria</fc>. Blood 132:868. [[http://www.ncbi.nlm.nih.gov/pubmed/30139832|(PMID: 30139832)]] | Branco A, [[people:jmelocristino|Melo-Cristino J]]. 2018. <fc #0000FF>Extreme parasitemia in //P. falciparum// malaria</fc>. Blood 132:868. [[http://www.ncbi.nlm.nih.gov/pubmed/30139832|(PMID: 30139832)]] | ||
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Branco A, Francisco D, Hänscheid T. 2018. <fc #0000FF>Is there a “normal” oxygen concentration for in vitro //Plasmodium// cultures?</fc> Trends Parasitol 34:811–812. [[http://www.ncbi.nlm.nih.gov/pubmed/30049603|(PMID: 30049603)]] | Branco A, Francisco D, Hänscheid T. 2018. <fc #0000FF>Is there a “normal” oxygen concentration for in vitro //Plasmodium// cultures?</fc> Trends Parasitol 34:811–812. [[http://www.ncbi.nlm.nih.gov/pubmed/30049603|(PMID: 30049603)]] | ||
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- | Hänscheid T, Grobusch MP. 2018. <fc #0000FF>Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</fc> Travel Med Infect Dis. //In press// [[http://www.ncbi.nlm.nih.gov/pubmed/30030070|(PMID: 30030070)]] | ||
Couto N, Schuele L, Raangs EC, [[people:mpmachado|Machado MP]], [[people:cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:ramirez|Ramirez M]],[[people:jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</fc>. Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w.[[http://www.ncbi.nlm.nih.gov/pubmed/30213965 |(PMID: 30213965)]] | Couto N, Schuele L, Raangs EC, [[people:mpmachado|Machado MP]], [[people:cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:ramirez|Ramirez M]],[[people:jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</fc>. Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w.[[http://www.ncbi.nlm.nih.gov/pubmed/30213965 |(PMID: 30213965)]] | ||
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Motro Y, [[people:jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</fc> Microbes Infect 20:275–280. [[http://www.ncbi.nlm.nih.gov/pubmed/29555344 |(PMID: 29555344)]] | Motro Y, [[people:jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</fc> Microbes Infect 20:275–280. [[http://www.ncbi.nlm.nih.gov/pubmed/29555344 |(PMID: 29555344)]] | ||
- | Silva M, [[people:mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:ramirez|Ramirez M]], [[people:jcarrico|Carriço JA]]. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</fc> Microb Genom. 2018 Mar 15. doi: 10.1099/mgen.0.000166. [Epub ahead of print] [[http://www.ncbi.nlm.nih.gov/pubmed/29543149 |(PMID: 29543149)]] | + | Silva M, [[people:mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:ramirez|Ramirez M]], [[people:jcarrico|Carriço JA]]. 2018. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</fc> Microb Genom. 4. doi: 10.1099/mgen.0.000166. [[http://www.ncbi.nlm.nih.gov/pubmed/29543149 |(PMID: 29543149)]] |
[[people:jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</fc> Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/s13015-017-0119-7. eCollection 2018. [[http://www.ncbi.nlm.nih.gov/pubmed/29467814 |(PMID: 29467814)]] | [[people:jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</fc> Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/s13015-017-0119-7. eCollection 2018. [[http://www.ncbi.nlm.nih.gov/pubmed/29467814 |(PMID: 29467814)]] |