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publications [2019/07/09 10:32]
ramirez [2019]
publications [2020/01/21 10:37]
ramirez [2019]
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 ====== Publications ====== ====== Publications ======
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 +===== 2020  =====
 +Hänscheid T, Grobusch MP. 2020. <fc #​0000FF>​Coenzyme Q10 and cerebral malaria in mice: Questionable interpretations,​ improbable usefulness in humans</​fc>​. Parasitol Int 74:101969. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31421269|(PMID:​ 31421269)]]
  
 ===== 2019  ===== ===== 2019  =====
 +[[people:​afriaes|Friães A]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Portuguese Group for the Study of Streptococcal Infections. 2019. <fc #​0000FF>​Changes in //emm// types and superantigen gene content of //​Streptococcus pyogenes// causing invasive infections in Portugal</​fc>​. Sci Rep 9:18051. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31792274|(PMID:​ 31792274)]]
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 +Hänscheid T, Schlagenhauf P, Grobusch MP. 2019. Atovaquone/​proguanil for malaria chemoprophylaxis - Could a difference in susceptibility during hepatic development explain the need to continue drug intake for 7 days post-exposure?​ Travel Med Infect Dis 101527. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31759143|(PMID:​ 31759143)]]
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 +Duque-Valencia J, Forero-Muñoz NR, Díaz FJ, [[people:​emartins|Martins E]], Barato P, Ruiz-Saenz J. 2019. <fc #​0000FF>​Phylogenetic evidence of the intercontinental circulation of a canine distemper virus lineage in the Americas</​fc>​. Sci Rep 9:15747. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31673120|(PMID:​ 31673120)]]
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 +Fleres G, Couto N, Schuele L, Chlebowicz M A, [[people:​cmendes|Mendes C I]], van der Sluis L W M, Rossen J W A, Friedrich A W, García-Cobos S. 2019. <fc #​0000FF>​Detection of a novel //mcr-5.4// gene variant in hospital tap water by shotgun metagenomic sequencing</​fc>​. J Antimicrob Chemother 74: 3626–3628 [[https://​www.ncbi.nlm.nih.gov/​pubmed/​31504580|(PMID:​ 31504580)]]
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 +Espadinha D, Sobral R G, [[people:​cmendes|Mendes C I]], Méric G, Sheppard S K, [[people:​jcarrico|Carriço JA]], de Lencastre H, Miragaia M. 2019. <fc #​0000FF>​Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of // Staphylococcus epidermidis//​ Clonal Lineages</​fc>​. Front Microbiol 10: 1971. [[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC6719527/​|(PMID:​ 31507574)]]
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 +Dias O, Saraiva J, Faria C, [[people:​ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #​0000FF>​iDS372,​ a phenotypically reconciled model for the metabolism of //​Streptococcus pneumoniae//​ strain R6</​fc>​. Front Microbiol 10:1283. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31293525|(PMID:​ 31293525)]]
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 Barkham T, Zadoks RN, Azmai MNA, Baker S, Bich VTN, Chalker V, Chau ML, Dance D, Deepak RN, van Doorn HR, Gutierrez RA, Holmes MA, Huong LNP, Koh TH, [[people:​emartins|Martins E]], Mehershahi K, Newton P, Ng LC, Phuoc NN, Sangwichian O, Sawatwong P, Surin U, Tan TY, Tang WY, Thuy NV, Turner P, Vongsouvath M, Zhang D, Whistler T, Chen SL. 2019. <fc #​0000FF>​One hypervirulent clone, sequence type 283, accounts for a large proportion of invasive //​Streptococcus agalactiae//​ isolated from humans and diseased tilapia in Southeast Asia</​fc>​. PLoS Negl Trop Dis 13:​e0007421. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31246981|(PMID:​ 31246981)]] Barkham T, Zadoks RN, Azmai MNA, Baker S, Bich VTN, Chalker V, Chau ML, Dance D, Deepak RN, van Doorn HR, Gutierrez RA, Holmes MA, Huong LNP, Koh TH, [[people:​emartins|Martins E]], Mehershahi K, Newton P, Ng LC, Phuoc NN, Sangwichian O, Sawatwong P, Surin U, Tan TY, Tang WY, Thuy NV, Turner P, Vongsouvath M, Zhang D, Whistler T, Chen SL. 2019. <fc #​0000FF>​One hypervirulent clone, sequence type 283, accounts for a large proportion of invasive //​Streptococcus agalactiae//​ isolated from humans and diseased tilapia in Southeast Asia</​fc>​. PLoS Negl Trop Dis 13:​e0007421. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​31246981|(PMID:​ 31246981)]]
  
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 Björnsdóttir ES, [[people:​emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #​0000FF>​Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</​fc>​. Pediatr Infect Dis J. 38:​620–624. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30299423|(PMID:​ 30299423)]] Björnsdóttir ES, [[people:​emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #​0000FF>​Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</​fc>​. Pediatr Infect Dis J. 38:​620–624. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30299423|(PMID:​ 30299423)]]
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 +Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2019. <fc #​0000FF>​A modified case definition to facilitate essential hospital care during Ebola outbreaks</​fc>​. Clin Infect Dis. 68:​1763–1768. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30239602|(PMID:​ 30239602)]]
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 +Hänscheid T, Grobusch MP. 2019. <fc #​0000FF>​Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</​fc>​ Travel Med Infect Dis. 28:104. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30030070|(PMID:​ 30030070)]]
 ===== 2018  ===== ===== 2018  =====
 Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:​jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #​0000FF>​First description of colistin and tigecycline-resistant //​Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</​fc>​. Antibiotics 7. [[https://​doi.org/​10.3390/​antibiotics7040096|doi:​10.3390/​antibiotics7040096]] [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30404152|(PMID:​ 30404152)]] Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:​jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #​0000FF>​First description of colistin and tigecycline-resistant //​Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</​fc>​. Antibiotics 7. [[https://​doi.org/​10.3390/​antibiotics7040096|doi:​10.3390/​antibiotics7040096]] [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30404152|(PMID:​ 30404152)]]
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 [[people:​cpato|Pato C]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #​0000FF>//​Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</​fc>​. Front Microbiol 9:​2372.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30356787|(PMID:​ 30356787)]] [[people:​cpato|Pato C]], [[people:​jmelocristino|Melo-Cristino J]], [[people:​ramirez|Ramirez M]], [[people:​afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #​0000FF>//​Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</​fc>​. Front Microbiol 9:​2372.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30356787|(PMID:​ 30356787)]]
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-Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2018. <fc #​0000FF>​A modified case definition to facilitate essential hospital care during Ebola outbreaks</​fc>​. Clin Infect Dis. //In press// [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30239602|(PMID:​ 30239602)]] [[https://​doi.org/​10.1093/​cid/​ciy798|doi:​10.1093/​cid/​ciy798]] 
  
 Branco A, [[people:​jmelocristino|Melo-Cristino J]]. 2018. <fc #​0000FF>​Extreme parasitemia in //P. falciparum//​ malaria</​fc>​. Blood 132:868. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30139832|(PMID:​ 30139832)]] Branco A, [[people:​jmelocristino|Melo-Cristino J]]. 2018. <fc #​0000FF>​Extreme parasitemia in //P. falciparum//​ malaria</​fc>​. Blood 132:868. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30139832|(PMID:​ 30139832)]]
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 Branco A, Francisco D, Hänscheid T. 2018. <fc #​0000FF>​Is there a “normal” oxygen concentration for in vitro //​Plasmodium//​ cultures?</​fc>​ Trends Parasitol 34:​811–812. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30049603|(PMID:​ 30049603)]] Branco A, Francisco D, Hänscheid T. 2018. <fc #​0000FF>​Is there a “normal” oxygen concentration for in vitro //​Plasmodium//​ cultures?</​fc>​ Trends Parasitol 34:​811–812. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30049603|(PMID:​ 30049603)]]
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- 
-Hänscheid T, Grobusch MP. 2018. <fc #​0000FF>​Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</​fc>​ Travel Med Infect Dis. //In press// [[http://​www.ncbi.nlm.nih.gov/​pubmed/​30030070|(PMID:​ 30030070)]] 
  
 Couto N, Schuele L, Raangs EC, [[people:​mpmachado|Machado MP]], [[people:​cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:​ramirez|Ramirez M]],​[[people:​jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</​fc>​. Sci Rep. 2018 Sep 13;​8(1):​13767. doi: 10.1038/​s41598-018-31873-w.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30213965 |(PMID: 30213965)]] Couto N, Schuele L, Raangs EC, [[people:​mpmachado|Machado MP]], [[people:​cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:​ramirez|Ramirez M]],​[[people:​jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</​fc>​. Sci Rep. 2018 Sep 13;​8(1):​13767. doi: 10.1038/​s41598-018-31873-w.[[http://​www.ncbi.nlm.nih.gov/​pubmed/​30213965 |(PMID: 30213965)]]
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 Motro Y, [[people:​jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</​fc>​ Microbes Infect 20:​275–280. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29555344 |(PMID: 29555344)]] Motro Y, [[people:​jcarrico|Carriço JA]], Friedrich AW, Rossen JW, Moran-Gilad J. 2018.<fc #0000FF> ESCMID Postgraduate Education Course Regional Capacity Building for Integration of Next-Generation Sequencing in the Clinical Microlab.</​fc>​ Microbes Infect 20:​275–280. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29555344 |(PMID: 29555344)]]
  
-Silva M, [[people:​mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:​ramirez|Ramirez M]], [[people:​jcarrico|Carriço JA]]. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</​fc>​ Microb Genom. ​2018 Mar 15. doi: 10.1099/​mgen.0.000166. ​[Epub ahead of print] ​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​29543149 |(PMID: 29543149)]]+Silva M, [[people:​mpmachado|Machado MP]], Silva DN, Rossi M, Moran-Gilad J, Santos S, [[people:​ramirez|Ramirez M]], [[people:​jcarrico|Carriço JA]]. 2018. <fc #0000FF> chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.</​fc>​ Microb Genom. ​4. doi: 10.1099/​mgen.0.000166. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29543149 |(PMID: 29543149)]]
  
 [[people:​jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:​bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</​fc>​ Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/​s13015-017-0119-7. eCollection 2018. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29467814 |(PMID: 29467814)]] ​ [[people:​jcarrico|Carriço JA]], Crochemore M, Francisco AP, Pissis SP, [[people:​bgoncalves|Ribeiro-Gonçalves B]], Vaz C.<fc #0000FF> Fast phylogenetic inference from typing data.</​fc>​ Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/​s13015-017-0119-7. eCollection 2018. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​29467814 |(PMID: 29467814)]] ​
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 Pinto, F. R., J. Melo-Cristino,​ and [[people:​ramirez|M. Ramirez]]. 2008. <fc #​0000FF>​A confidence interval for the Wallace coefficient of concordance and its application to microbial typing methods</​fc>​. PLoS ONE 3:e3696. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19002246|(PMID:​ 19002246)]] Pinto, F. R., J. Melo-Cristino,​ and [[people:​ramirez|M. Ramirez]]. 2008. <fc #​0000FF>​A confidence interval for the Wallace coefficient of concordance and its application to microbial typing methods</​fc>​. PLoS ONE 3:e3696. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19002246|(PMID:​ 19002246)]]
  
-Aguiar, S. I., I. Serrano, F. R. Pinto, J. Melo-Cristino,​ [[people:​ramirez|M. Ramirez]], and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Changes in pneumococcal ​invasive disease with non-universal vaccination coverage of the seven-valent conjugate vaccine</​fc>​. Clin. Microbiol. Infect. 14:835-843. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​18844684|(PMID:​ 18844684)]]+Aguiar, S. I., I. Serrano, F. R. Pinto, J. Melo-Cristino,​ [[people:​ramirez|M. Ramirez]], and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Changes in //​Streptococcus pneumoniae//​ serotypes causing ​invasive disease with non-universal vaccination coverage of the seven-valent conjugate vaccine</​fc>​. Clin. Microbiol. Infect. 14:835-843. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​18844684|(PMID:​ 18844684)]]
  
 Silva-Costa,​ C., F. R. Pinto, [[people:​ramirez|M. Ramirez]], J. Melo-Cristino,​ and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Decrease in macrolide resistance and clonal instability among //​Streptococcus pyogenes// in Portugal</​fc>​. Clin. Microbiol. Infect. 14:​1152-1159. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19046174|(PMID:​ 19046174)]] Silva-Costa,​ C., F. R. Pinto, [[people:​ramirez|M. Ramirez]], J. Melo-Cristino,​ and the Portuguese Surveillance Group for the Study of Respiratory Pathogens. 2008. <fc #​0000FF>​Decrease in macrolide resistance and clonal instability among //​Streptococcus pyogenes// in Portugal</​fc>​. Clin. Microbiol. Infect. 14:​1152-1159. [[http://​www.ncbi.nlm.nih.gov/​pubmed/​19046174|(PMID:​ 19046174)]]
  • publications.txt
  • Last modified: 2024/02/13 16:00
  • by ramirez