Differences

This shows you the differences between two versions of the page.

--- people:ramirez [2018/08/23 10:38]
ramirez [Websites]
+++ people:ramirez [2022/07/12 15:22] (current)
ramirez
@@ Line 2: / Line 2: @@
 {{:people:ramirez.jpeg|}}
 <html>
-<span id='badgeCont246818' style='width:126px'><script src='http://labs.researcherid.com/mashlets?el=badgeCont246818&mashlet=badge&showTitle=false&className=a&rid=B-4993-2008'></script></span>
+<span id="badgeCont652"><script type="text/javascript" src="https://publons.com/mashlets?el=badgeCont652&rid=B-4993-2008"></script></span>
 </html>
 [[http://orcid.org/0000-0002-4084-6233|{{:people:orcid-logo.png?150|0000-0002-4084-6233}}]]
@@ Line 13: / Line 13: @@
 </html>
 ===== Current Position =====
-**Associate Professor**\\
+**Associate Professor** ("com agregação")\\
 Instituto de Microbiologia,[[http://www.fm.ul.pt/|Faculdade de Medicina de Lisboa]], [[http://www.ul.pt/|Universidade de Lisboa]], Lisboa, Portugal\\
@@ Line 28: / Line 28: @@
 **Mathematical and computational biology** : Univariate/Multivariate Statistics for Data Analysis, Graph theory, Resampling Methods, Congruence Measurements, Evolutionary Models\\
 ===== Websites =====
-[[http://patlas.site|pAtlas]] - A plasmid database do facilitate plasmid detection in highthrouput data and the exploration of plasmid space.
+[[https://chewbbaca.online/|chewBBACA online]] - A whole genome/core genome multilocus sequence typing (wg/cgMLST) database developed facilitate the comparison of wg/cgMLST typing data obtained from high-throughput sequencing.
-[[http://www.phyloviz.net|PHYLOViZ]] - a software allowing the visualization of accessory epidemiological data together with evolutionary hypothesis derived from MLST, MLVA or SNP data developed in the lab in collaboration with INESC.
+[[http://patlas.site|pAtlas]] - A plasmid database developed in the lab to facilitate plasmid detection in high-throughput data and the exploration of plasmid space.
-[[http://www.comparingpartitions.info|Comparing Partitions]] - a site developed in the lab for comparing classification schemes\\
+[[http://www.phyloviz.net|PHYLOViZ]] - a software allowing the visualization of accessory epidemiological data together with evolutionary hypothesis derived from MLST, MLVA or SNP data developed in the lab in collaboration with INESC. PHYLOViZ uses the goeBURST algorithm, a globally optimized implementation of the eBURST algorithm, to create minimum spanning tree like representations of the data. Both a desktop JAVA implementation and an online version are available.
-[[http://goeburst.phyloviz.net/|goeBURST]] - a globally optimized implementation of the eBURST algorithm for the analysis of MLST data developed in the lab in collaboration with INESC.
+[[http://www.comparingpartitions.info|Comparing Partitions]] - a site developed in the lab for comparing classification schemes\\
 ===== Contacts =====
@@ Line 47: / Line 47: @@
 [[http://orcid.org/0000-0002-4084-6233|{{:people:orcid-icon.png}}]][[http://www.scopus.com/inward/authorDetails.url?authorID=7201568476&partnerID=MN8TOARS|{{:people:scopus.ico}}]][[http://www.researcherid.com/rid/B-4993-2008|{{:people:researcherid.ico}}]][[http://scholar.google.com/citations?user=EWHFzOAAAAAJ&hl=en|{{:people:googlescholar.jpg?100}}]]
-[[http://www.ncbi.nlm.nih.gov/pubmed?term=ramirez+m+AND+%28de+lencastre+OR+tomasz+a+OR+melo-cristino+OR+carrico+j+OR+pinto+fr+OR+aguiar+s+OR+frias+mj+OR+margarit+i%29|{{:people:pubmedimage1.jpg?100|}}]]
+[[https://www.ncbi.nlm.nih.gov/pubmed?term=ramirez+m+AND+(de+lencastre+OR+tomasz+a+OR+melo-cristino+OR+carrico+ja+OR+carri%C3%A7o+ja+OR+pinto+f+OR+aguiar+s+OR+frias+mj+OR+margarit+i+OR+mota+mm)&sort=date|{{:people:pubmedimage1.jpg?100|}}]][[https://www.cienciavitae.pt/9C1C-F2A2-4226|{{:people:cienciavitae.jpg?200|}}]]
 **Publications after 2003:**
@@ Line 55: / Line 55: @@
 **Publications before 2003:**
-**J. Melo-Cristino, J., Ramirez, M., N. Serrano, T. Hänscheid and the Portuguese Surveillance Group for the Study of Respiratory Pathogens**. 2002. Macrolide resistance in //Streptococcus pneumoniae// isolated from patients with community-acquired lower respiratory tract infections in Portugal: Results of a 3-year (1999 – 2001) multicenter surveillance study. Microb. Drug Resist. 9: 73-80. [[http://www.ncbi.nlm.nih.gov/pubmed/12705685|(PMID: 12705685)]]
+**J. Melo-Cristino, J., __Ramirez, M.__, N. Serrano, T. Hänscheid and the Portuguese Surveillance Group for the Study of Respiratory Pathogens**. 2002. Macrolide resistance in //Streptococcus pneumoniae// isolated from patients with community-acquired lower respiratory tract infections in Portugal: Results of a 3-year (1999 – 2001) multicenter surveillance study. Microb. Drug Resist. 9: 73-80. [[http://www.ncbi.nlm.nih.gov/pubmed/12705685|(PMID: 12705685)]]
-**Alou, L., Ramirez, M., García-Rey, C., Prieto, J. and H. de Lencastre**. 2001. //Streptococcus pneumoniae// isolates with reduced susceptibility to ciprofloxacin in Spain: clonal diversity and appearance of ciprofloxacin resistant epidemic clones. Antimicrob. Agents Chemother. 45:2955-7. [[http://www.ncbi.nlm.nih.gov/pubmed/11557501|(PMID: 11557501)]]
+**Alou, L., __Ramirez, M.__, García-Rey, C., Prieto, J. and H. de Lencastre**. 2001. //Streptococcus pneumoniae// isolates with reduced susceptibility to ciprofloxacin in Spain: clonal diversity and appearance of ciprofloxacin resistant epidemic clones. Antimicrob. Agents Chemother. 45:2955-7. [[http://www.ncbi.nlm.nih.gov/pubmed/11557501|(PMID: 11557501)]]
-**Ramirez, M., and A. Tomasz**. 1999. Acquisition of new capsular genes among clinical isolates of antibiotic- resistant //Streptococcus pneumoniae//. Microb. Drug Resist. 5:241-6. [[http://www.ncbi.nlm.nih.gov/pubmed/10647080|(PMID: 10647080)]]
+**__Ramirez, M.__, and A. Tomasz**. 1999. Acquisition of new capsular genes among clinical isolates of antibiotic- resistant //Streptococcus pneumoniae//. Microb. Drug Resist. 5:241-6. [[http://www.ncbi.nlm.nih.gov/pubmed/10647080|(PMID: 10647080)]]
-**Severina, E., M. Ramirez, and A. Tomasz**. 1999. Prophage carriage as a molecular epidemiological marker in //Streptococcus pneumoniae//. J. Clin. Microbiol. 37:3308-15. [[http://www.ncbi.nlm.nih.gov/pubmed/10488197|(PMID: 10488197)]]
+**Severina, E., __M. Ramirez__, and A. Tomasz**. 1999. Prophage carriage as a molecular epidemiological marker in //Streptococcus pneumoniae//. J. Clin. Microbiol. 37:3308-15. [[http://www.ncbi.nlm.nih.gov/pubmed/10488197|(PMID: 10488197)]]
-**Ramirez, M., E. Severina, and A. Tomasz**. 1999. A high incidence of prophage carriage among natural isolates of //Streptococcus pneumoniae//. J. Bacteriol. 181:3618-25. [[http://www.ncbi.nlm.nih.gov/pubmed/10368133|(PMID: 10368133)]]
+**__Ramirez, M.__, E. Severina, and A. Tomasz**. 1999. A high incidence of prophage carriage among natural isolates of //Streptococcus pneumoniae//. J. Bacteriol. 181:3618-25. [[http://www.ncbi.nlm.nih.gov/pubmed/10368133|(PMID: 10368133)]]
-**Ramirez, M. and A. Tomasz**. 1998. Molecular characterization of the complete 23F capsular polysaccharide locus of //Streptococcus pneumoniae//. J. Bacteriol. 180:5273-8. [[http://www.ncbi.nlm.nih.gov/pubmed/9748469|(PMID: 9748469)]]
+**__Ramirez, M.__ and A. Tomasz**. 1998. Molecular characterization of the complete 23F capsular polysaccharide locus of //Streptococcus pneumoniae//. J. Bacteriol. 180:5273-8. [[http://www.ncbi.nlm.nih.gov/pubmed/9748469|(PMID: 9748469)]]
-**Marchese, A., M. Ramirez, G. C. Schito, Tomasz, A.**. 1998. Molecular epidemiology of penicillin-resistant //Streptococcus pneumoniae// isolates recovered in Italy from 1993 to 1996. J. Clin. Microbiol. 36:2944-9. [[http://www.ncbi.nlm.nih.gov/pubmed/9738048|(PMID: 9738048)]]
+**Marchese, A., __M. Ramirez__, G. C. Schito, Tomasz, A.**. 1998. Molecular epidemiology of penicillin-resistant //Streptococcus pneumoniae// isolates recovered in Italy from 1993 to 1996. J. Clin. Microbiol. 36:2944-9. [[http://www.ncbi.nlm.nih.gov/pubmed/9738048|(PMID: 9738048)]]
-**Nesin, M., Ramirez, M., Tomasz, A.** 1998. Capsular transformation of a multidrug resistant //Streptococcus pneumoniae// in vivo. J. Infect. Diseases, 177, 707-703. [[http://www.ncbi.nlm.nih.gov/pubmed/9498451|(PMID: 9498451)]]
+**Nesin, M., __Ramirez, M.__, Tomasz, A.** 1998. Capsular transformation of a multidrug resistant //Streptococcus pneumoniae// in vivo. J. Infect. Diseases, 177, 707-703. [[http://www.ncbi.nlm.nih.gov/pubmed/9498451|(PMID: 9498451)]]
-**Ramirez, M., Tomasz, A., Morrison, D.** 1996. Ubiquitous distribution of the competence related genes //comA// and //comC// among isolates of //Streptococcus pneumoniae//. Microbial Drug Resistance, 3, 39-52. [[http://www.ncbi.nlm.nih.gov/pubmed/9109095|(PMID: 9109095)]]
+**__Ramirez, M.__, Tomasz, A., Morrison, D.** 1996. Ubiquitous distribution of the competence related genes //comA// and //comC// among isolates of //Streptococcus pneumoniae//. Microbial Drug Resistance, 3, 39-52. [[http://www.ncbi.nlm.nih.gov/pubmed/9109095|(PMID: 9109095)]]
-**Santos Sanches, I., Ramirez, M., Troni, H., Abecassis, M., Padua, M., Tomasz, A., De Lencastre, H.** 1995. Evidence for the geographic spread of a methicillin-resistant //Staphylococcus aureus// clone between Portugal and Spain. J. Clin. Microbiol., 3, 1243-46. [[http://www.ncbi.nlm.nih.gov/pubmed/7615735|(PMID: 7615735)]]
+**Santos Sanches, I., __Ramirez, M.__, Troni, H., Abecassis, M., Padua, M., Tomasz, A., De Lencastre, H.** 1995. Evidence for the geographic spread of a methicillin-resistant //Staphylococcus aureus// clone between Portugal and Spain. J. Clin. Microbiol., 3, 1243-46. [[http://www.ncbi.nlm.nih.gov/pubmed/7615735|(PMID: 7615735)]]