Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
courses:bioinformatics [2010/03/16 15:56]
jcarrico
courses:bioinformatics [2018/02/19 18:06] (current)
Line 11: Line 11:
 The students need to prepare a 15-20 mins presentation about the paper (5 powerpoint slides maximum, can be prepared to guide the presentation),​ presenting the general idea of the paper, by explaining the problem, describing what methods were used, and what were the article main achievements.\\ The students need to prepare a 15-20 mins presentation about the paper (5 powerpoint slides maximum, can be prepared to guide the presentation),​ presenting the general idea of the paper, by explaining the problem, describing what methods were used, and what were the article main achievements.\\
  
-All the course talks will be on **room 51** floor 0 of EEM building. The only exception will be David Aanansen'​s talk, that is scheduled to **room 57**, since it is a IMM seminar.+All the course talks will be on **room 51** floor 0 of EEM building ​for Monday and WednesdayThe Tuesday classes will be on **room 52**.\\ 
 +The only exception will be David Aanansen'​s talk, that is scheduled to **room 57**, since it is a IMM seminar.
   ​   ​
- 
 ==== Course Schedule ==== ==== Course Schedule ====
  
 ^ Monday 22 ^  Speaker ​ ^  Title  ^ Paper  ^ ^ Monday 22 ^  Speaker ​ ^  Title  ^ Paper  ^
-|  9:00 - 10:00  |  Pedro Fernandes ​ |   Data resources for Biomedical usage  |  1)  {{:​courses:​1_brooksbank_nucleic_acids_research_2010.pdf|}} ​ |   +|  9:00 - 10:00  |  ​[[http://​pt.linkedin.com/​in/​pedrofernandesbioinformatics|Pedro Fernandes]] ([[http://​gtpb.igc.gulbenkian.pt/​bicourses/​|GTBC]],​[[http://​hermes.igc.gulbenkian.pt/​|Hermes]]) ​ ​| ​  Data resources for Biomedical usage  |  1)  {{:​courses:​1_brooksbank_nucleic_acids_research_2010.pdf|}} ​ |   
-|  10:00 - 11:00  |  Ana Teresa Freitas ​ |   ​Biological Sequence Analysis ​ |  2) {{:​courses:​2_pertsemlidis_genome_biol_2001.pdf|}} ​ |+|  10:00 - 11:00  |  ​[[http://​kdbio.inesc-id.pt/​~atf/​ |Ana Teresa Freitas]]  ​| ​ ​{{:​courses:​biologicalsequencealignment.pdf|Biological Sequence Analysis ​}}  ​| ​ 2) {{:​courses:​2_pertsemlidis_genome_biol_2001.pdf|}} ​ |
 |  11h00 - 12h00  |  //Journal Club// 1)+2)  ||| |  11h00 - 12h00  |  //Journal Club// 1)+2)  |||
-|  12h00 - 13h00  |  David Aanansen  ​|  The use and development of web applications for infectious disease microbiology ​ |  3) {{:​courses:​3_grundmann_plos_med_2010.pdf|}} ​ |+|  12h00 - 13h00  |  ​[[http://​www1.imperial.ac.uk/​medicine/​people/​d.aanensen/​ | David Aanensen]] ​  |  The use and development of web applications for infectious disease microbiology ​ |  3) {{:​courses:​3_grundmann_plos_med_2010.pdf|}} ​ |
 |  13h00 - 14h30  |  Lunch  ||| |  13h00 - 14h30  |  Lunch  |||
-|  14h30 - 15h30  |  João André Carriço ​ |  Epidemiological Data Integration, ​Visualization and Analysis: from databases to population genetics ​ |  4) {{:​courses:​4_francisco_bmc_bioinformatics_2009.pdf|}} ​ | +|  14h30 - 15h30  |  ​[[http://​www.joaocarrico.info|João André Carriço]]  ​|  ​{{:​courses:​jac_bioinfnanocourse.pdf| ​Epidemiological Data Integration,​ Analysis ​and Visualization: from databases to population genetics}}  ​| ​ 4) {{:​courses:​4_francisco_bmc_bioinformatics_2009.pdf|}} ​ | 
-|  15h30 - 16h30  |  Francisco Couto  |  Untangling BioOntologies for Effectively Exploring Biomedical Information ​ |  5) {{:​courses:​5_pesquita_ploscompbiol_2009.pdf|}} ​ |+|  15h30 - 16h30  |  ​[[http://​homepages.di.fc.ul.pt/​~fjmc/​|Francisco Couto]]  ​| ​ Untangling BioOntologies for Effectively Exploring Biomedical Information ​ |  5) {{:​courses:​5_pesquita_ploscompbiol_2009.pdf|}} ​ |
 |  16h30 - 18h00  |  //Journal Club// 3)+4)+5) ​ ||| |  16h30 - 18h00  |  //Journal Club// 3)+4)+5) ​ |||
 \\ \\
 \\ \\
 ^ Tuesday 23 ^  Speaker ​ ^  Title  ^ Paper  ^ ^ Tuesday 23 ^  Speaker ​ ^  Title  ^ Paper  ^
-|  14h00 - 15h00  |  Francisco Pinto  |  Topology-function relations in regulatory networks ​ |  6) {{:​courses:​6_milo_science_2002.pdf|}} ​ |   +|  14h00 - 15h00  |  ​[[http://​www.dqb.fc.ul.pt/​docentes/​frpinto/​|Francisco Pinto]]  ​| ​ Topology-function relations in regulatory networks ​ |  6) {{:​courses:​6_milo_science_2002.pdf|}} ​ |   
-|  15h00 - 16h00  |  Sara Mandeira ​ ​| ​ An overview on heterogeneous data integration in biology and medicine ​ |  7) {{{:​courses:​7_huttenhower_genome_research_2009.pdf|}} ​ |+|  15h00 - 16h00  |  ​[[https://​fenix.ist.utl.pt:​443/​homepage/​ist46399|Sara Madeira]] ​ ​| ​ An overview on heterogeneous data integration in biology and medicine ​ |  7) {{{:​courses:​7_huttenhower_genome_research_2009.pdf|}} ​ |
 |  16h15 - 18h00  |  //Journal Club// 6)+7)  |||  ​ |  16h15 - 18h00  |  //Journal Club// 6)+7)  |||  ​
 \\ \\
 \\ \\
 ^ Wednesday 24 ^  Speaker ​ ^  Title  ^ Paper  ^ ^ Wednesday 24 ^  Speaker ​ ^  Title  ^ Paper  ^
-|  9h00 - 10h00  |  Claudine Chaouiya ​ |   ​Qualitative modelling provides insights into the functioning of large biological regulatory networks ​ |  8)  {{:​courses:​8_samaga_plos_comput_biol_2009.pdf|}} ​ |   +|  9h00 - 10h00  |  ​[[http://​compbio.igc.gulbenkian.pt/​nmd/​node/​14|Claudine Chaouiya]]  ​| ​ ​{{:​courses:​c_chaouiya_imm_2010.pdf|Qualitative modelling provides insights into the functioning of large biological regulatory networks}}  ​| ​ 8)  {{:​courses:​8_samaga_plos_comput_biol_2009.pdf|}} ​ |   
-|  10h00 - 11h00  |  Jorge Carneiro ​ |   ​Towards the automated analysis of living cells and tissues based on morphodynamic models ​ |  9)  {{:​courses:​9_farhadifar_curr_biol_2007.pdf|}} ​ |+|  10h00 - 11h00  |  ​[[http://​eao.igc.gulbenkian.pt/​ti/​Gente/​Jorge/​|Jorge Carneiro]]  ​| ​  ​Towards the automated analysis of living cells and tissues based on morphodynamic models ​ |  9)  {{:​courses:​9_farhadifar_curr_biol_2007.pdf|}} ​ |
 |  11h00 - 12h00  |  //Journal Club// 8)+9)  ||| |  11h00 - 12h00  |  //Journal Club// 8)+9)  |||
 |  12h00 - 14h00  |  Lunch  ||| |  12h00 - 14h00  |  Lunch  |||
-|  14h00 - 15h00  |  Isabel Rocha  |  Metabolic Systems Biology ​ |  10) {{:​courses:​10_chavali_mol_syst_biol_2008.pdf|}} ​ | +|  14h00 - 15h00  |  ​[[http://​biopseg.deb.uminho.pt/​irocha/​|Isabel Rocha]]  ​| ​ Metabolic Systems Biology ​ |  10) {{:​courses:​10_chavali_mol_syst_biol_2008.pdf|}} ​ | 
-|  15h00 - 16h00  |  Andreas Bohn  |  Computing microbial biofilms: a case for ecological informatics ​ |  11) {{:​courses:​11_jones_annu_rev_ecol_evol_sys_2008.pdf|}} ​ |+|  15h00 - 16h00  |  ​[[http://​sbd.itqb.unl.pt/​Site/​Home.html|Andreas Bohn]]  ​| ​ Computing microbial biofilms: a case for ecological informatics ​ |  11) {{:​courses:​11_jones_annu_rev_ecol_evol_sys_2008.pdf|}} ​ |
 |  16h15 - 18h00  |  //Journal Club// 10)+11) ​ |||  ​ |  16h15 - 18h00  |  //Journal Club// 10)+11) ​ |||  ​
  
-==== Participants ​==== + 
-To be announced +====  ​Journal Club Articles  ​==== 
-==== Workgroups ====  + 
-To be announced+[[courses:​bioinformatics:​articles| Click here for Journal Club Article keywords ]]
  • courses/bioinformatics.1268751383.txt.gz
  • Last modified: 2018/02/19 18:06
  • (external edit)