Table of Contents

Bioinformatics Nano Course

1. Dates: 22-24 Mar 2010
2. Name: Bioinformatics: What? When? How?
3. Description: This nano course aims to answer three major questions about Bioinformatics: What is Bioinformatics? When should we consider a Bioinformatics approach? And how can Bioinformatics help us in a specific field of molecular biology?. To accomplish this goal, a series of lectures on different fields of Bioinformatics will be presented, in areas ranging from biologically relevant Databases to methods of High-throughput Genomics. We will present the current state of the art and what are the future perspectives, challenges and goals in the field.

Course Program

This course will consist in a series of talks followed by short journal clubs where groups of students will present papers suggested by the speakers of the previews talks.
The students need to prepare a 15-20 mins presentation about the paper (5 powerpoint slides maximum, can be prepared to guide the presentation), presenting the general idea of the paper, by explaining the problem, describing what methods were used, and what were the article main achievements.

Course Schedule

Monday 22 Speaker Title Paper
9:00 - 10:00 Pedro Fernandes Data resources for Biomedical usage 1) 1_brooksbank_nucleic_acids_research_2010.pdf
10:00 - 11:00 Ana Teresa Freitas Biological Sequence Analysis 2) 2_pertsemlidis_genome_biol_2001.pdf
11:00 - 12:00 Journal Club 1)+2)
12:00 - 13:00 David Aanansen The use and development of web applications for infectious disease microbiology 3) 3_grundmann_plos_med_2010.pdf
13:00 - 14:30 Lunch
14h30 - 15h30 João André Carriço Epidemiological Data Integration, Visualization and Analysis: from databases to population genetics 4)
15h30 - 16h30 Francisco Couto Untangling BioOntologies for Effectively Exploring Biomedical Information 5)
16h30 - 18h00 Journal Club 3)+4)+5)

 Mon 22Tue 23Wed 24
9.00-10.00Pedro Fernandes
Data resources for Biomedical usage
Claudine Chaouiya
Qualitative modelling provides insights into the functioning of large biological regulatory networks
10.00-11.00Ana Teresa Freitas
Biological Sequence Analysis
Jorge Carneiro
Towards the automated analysis of living cells and tissues based on morphodynamic models
11.00-12.00--JC----JC--
12.00-13.00IMM Seminar - David Aanansen
The use and development of web applications for infectious disease microbiology
LUNCH - Pizza SeminarLUNCH
13.00-14.00LUNCHLUNCHLUNCH
14.00-15.00(14h30) João A Carriço
Epidemiological Data Integration, Visualization and Analysis: from databases to population genetics
Francisco Pinto
Topology-function relations in regulatory networks
Isabel Rocha
Metabolic Systems Biology
15.00-16.00(15:30)Francisco Couto
Untangling BioOntologies for Effectively Exploring Biomedical Information
Sara Madeira
An overview on heterogeneous data integration in biology and medicine
Andreas Bohn
Computing microbial biofilms: a case for ecological informatics
16.00-17.00--JC----JC----JC--
17.00-18.00--JC----JC----JC--