====== Miguel Machado ======

===== Bio =====

**Full Name**: Miguel Paulo Machado\\

**Academic Qualification**: 
  * Master Degree: Evolutionary and Developmental Biology - FC/UL\\
  * Degree: Biology (Evolutionary and Developmental Biology) - FC/UL\\

===== Current Position =====

**Research Student**\\
\\
[[https://imm.medicina.ulisboa.pt/en/investigacao/labs/ramirez-lab/|Molecular Microbiology and Infection Unit (M Ramirez Lab)]], [[https://imm.medicina.ulisboa.pt/en/|Instituto de Medicina Molecular]]\\
Instituto de Microbiologia, [[http://www.medicina.ulisboa.pt/|Faculdade de Medicina da Universidade de Lisboa]]\\ 

===== Research Interests =====

  * //De novo// assembly NGS/HTS data
  * Bacteria pan-genome analysis
  * Virulence factors discovery
  * Host-pathogen adaptation

===== Websites =====

[[https://github.com/B-UMMI|GitHub Bioinformatics @ Molecular Microbiology and Infection Unit]]\\
\\
[[http://ce3c.ciencias.ulisboa.pt/member/miguel-p-machado|Centre for Ecology, Evolution and Environmental Changes]]\\
\\
[[https://www.researchgate.net/profile/Miguel_Machado5|ResearchGate]]\\
[[https://pt.linkedin.com/in/miguel-machado-151ab111|LinkedIn]]\\

===== Contacts =====

**Emails**: 
  * mpmachado_at_medicina.ulisboa.pt (replace _at_ by @)\\

===== Publications =====

Machado MP, [[people:bgoncalves|Ribeiro-Gonçalves B]], Silva M, [[people:ramirez|Ramirez M]], [[people:jcarrico|Carriço JA]]. 2017. <fc #0000FF>Epidemiological surveillance and typing methods to track antibiotic resistant strains using high throughput sequencing</fc>. Methods Mol Biol 1520:331–355. [[http://www.ncbi.nlm.nih.gov/pubmed/27873262|(PMID: 27873262)]]\\
\\
[[people:afriaes|Friães A]], Machado MP, [[people:cpato|Pato C]], [[people:jcarrico|Carriço JA]], [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]]. 2015. <fc #0000FF>Emergence of the same successful clade among distinct populations of //emm//89 //Streptococcus pyogenes// in multiple geographic regions</fc>. MBio 6. pii: e01780-15. [[http://www.ncbi.nlm.nih.gov/pubmed/26628724|(PMID: 26628724)]]\\