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--- publications [2025/12/22 15:01]
ramirez [2025]
+++ publications [2026/05/25 16:51] (current)
ramirez [2025]
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 ====== Publications ======
-===== 2025  =====
+===== 2026  =====
-van der Ende J, Dávila MV, Menting S, Sáenz FE, Hanscheid T, Schallig HDFH, Grobusch MP. 2025. <fc #0000FF>Asymptomatic parasitaemia in a malaria pre-elimination setting in the Putumayo area of the Ecuadorian Amazon basin</fc>. Malar J //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/41413552/|(PMID: 41413552)]].
+van Os J, de Jong HK, Pellejero-Sagastizabal G, Paño-Pardo JR, Lescure F-X, Hanscheid T, Grobusch MP, Goorhuis A. 2026. <fc #0000FF>Analysing outbreak signals, 2013-2024: the Amsterdam UMC centre for tropical medicine and travel medicine epi alert programme - an observational study</fc>. New Microbes New Infect 71:101756. [[https://www.ncbi.nlm.nih.gov/pubmed/42125210/|(PMID: 42125210)]].
-Mahomed SM, Hanscheid T, Almeida Y, Grobusch MP, Rebelo M. 2025. <fc #0000FF>Improving reproducibility of //Plasmodium falciparum// culture: a large-language-model-driven literature review and a parasite growth variability assessment of donor red blood cells</fc>. Malar J //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/41398683/|(PMID: 41398683)]].
+Grobusch MP, Adegbite BR, Hanscheid T, Gupta N. 2026. <fc #0000FF>The impact of state-of-the-art pharmacotherapy for malaria in infants: a breakthrough?</fc> Expert Opin Pharmacother 1–3 [[https://www.ncbi.nlm.nih.gov/pubmed/42059410/|(PMID: 42059410)]].
-Boto CM, Raposo Carneiro S, Ramalho M, Passos Coelho I, Moitinho de Almeida I, Ferreira C, Tomé ML, Sousa Dias M, Araújo Carvalho A, Machado R, Oliveira M, Seruca M, Boto L, Prata F, Penteado R, Carmo A, Rodrigues F, Tavares M, Rebelo S, Ribeiro M, [[people:jfsilva|Gomes-Silva J]], [[people:afriaes|Friães A]], [[people:anacosta|Silva-Costa C]], [[people:ramirez|Ramirez M]], [[people:jmelocristino|Melo-Cristino J]], Pereira Lemos A, Gouveia C. 2025. <fc #0000FF>Increasingly frequent parapneumonic empyema by group A streptococcus is more severe than by //Streptococcus pneumoniae//</fc>. Pediatr Infect Dis J //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/41334964/|(PMID: 41334964)]].
+Grobusch MP, Schnyder JL, Schlagenhauf P, de Jong HK, Hanscheid T. 2026. <fc #0000FF>Malaria prevention: progress to date</fc>. Drugs //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/42045630/|(PMID: 42045630)]].
-van der Ende J, Bezemer JM, Hanscheid T, Grobusch MP, Trueba G. 2025. Amazon environment sharing featuring humans - dogs - capybaras and more. Adapting a one-health approach to leptospirosis prevention in indigenous riverine communities in Ecuador and beyond. New Microbes New Infect 68:101658 [[https://www.ncbi.nlm.nih.gov/pubmed/41278579/|(PMID: 41278579)]].
+Mamede R, Vila-Cerqueira P, Carriço JA, [[people:ramirez|Ramirez M]]. 2026. <fc #0000FF>chewBBACA 3: lowering the barrier for scalable and detailed whole- and core-genome multilocus sequence typing</fc>. Genome Med 18:51. [[https://www.ncbi.nlm.nih.gov/pubmed/41877275/|(PMID: 41877275)]].
+de Oliveira LOV, Ferreira LMSR, de Pereira DSCA, Firmino FT, Candal MS, Pereira HS, de Carli Farias da Silva G, Morellato SA, Geiger SM, Negrão-Corrêa D, Dollabella S, Fujiwara RT, Hanscheid T, Graeff-Teixeira C. 2026. <fc #0000FF>Modifications of the helmintex method: integration of treatments with tween 20, cellulase, percoll and auramine-O staining for detection of //Schistosoma mansoni// eggs</fc>. Trop med int health //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/41830103/|(PMID: 41830103)]].
+Pereira DSC de A, Oliveira LOVO, Firmino FT, Hanscheid T, Pulak R, Jones M, Dolabella S, Negrão-Corrêa D, Graeff-Teixeira C. 2026. <fc #0000FF>Miracidia as main source for autofluorescence of //Schistosoma mansoni// eggs</fc>. Mem Inst Oswaldo Cruz 121:e250215. [[https://www.ncbi.nlm.nih.gov/pubmed/41810683/|(PMID: 41810683)]].
+van der Ende J, Davila MV, Coloma J, Schallig H, Hanscheid T, Grobusch MP. 2026. <fc #0000FF>Presence of dengue virus NS1 antigen and IgM and IgG antibodies in asymptomatic individuals in ecuadorian amazonia - a descriptive repeated cross-sectional community-based survey</fc>. New Microbes New Infect 70:101728. [[https://www.ncbi.nlm.nih.gov/pubmed/41783243/|(PMID: 41783243)]].
+Tsiodras S, Gupta N, Hanscheid T, Jokelainen P, Drexler JF, Barac A, Gkrania-Klotsas E, Mora-Rillo M, Bulescu C, Paño-Pardo JR, Lescure FX, Grobusch MP. 2026. <fc #0000FF>Language, trust, and the polio endgame: words matter in vaccine communication</fc>. Clin Microbiol Infect S1198-743X(26)00081–9. [[https://www.ncbi.nlm.nih.gov/pubmed/41765092/|(PMID: 41765092)]].
+Martins ER, Forofontov M, Mota Freitas J, [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]]. 2026. <fc #0000FF>Two //Streptococcus agalactiae// ST283 invasive infections in Portugal raise the possibility of the emergence of this unusual lineage in Europe</fc>. Front Microbiol 16: 1712362. [[https://www.ncbi.nlm.nih.gov/pubmed/41669694/|(PMID: 41669694)]].
+Boto CM, Raposo Carneiro S, Ramalho M, Passos Coelho I, Moitinho de Almeida I, Ferreira C, Tomé ML, Sousa Dias M, Araújo Carvalho A, Machado R, Oliveira M, Seruca M, Boto L, Prata F, Penteado R, Carmo A, Rodrigues F, Tavares M, Rebelo S, Ribeiro M, [[people:jfsilva|Gomes-Silva J]], [[people:afriaes|Friães A]], [[people:anacosta|Silva-Costa C]], [[people:ramirez|Ramirez M]], [[people:jmelocristino|Melo-Cristino J]], Pereira Lemos A, Gouveia C. 2025. <fc #0000FF>Increasingly frequent parapneumonic empyema by group A streptococcus is more severe than by //Streptococcus pneumoniae//</fc>. Pediatr Infect Dis J 45:312–316 [[https://www.ncbi.nlm.nih.gov/pubmed/41334964/|(PMID: 41334964)]].
+===== 2025  =====
+van der Ende J, Dávila MV, Menting S, Sáenz FE, Hanscheid T, Schallig HDFH, Grobusch MP. 2025. <fc #0000FF>Asymptomatic parasitaemia in a malaria pre-elimination setting in the Putumayo area of the Ecuadorian Amazon basin</fc>. Malar J 25:52 [[https://www.ncbi.nlm.nih.gov/pubmed/41413552/|(PMID: 41413552)]].
+Mahomed SM, Hanscheid T, Almeida Y, Grobusch MP, Rebelo M. 2025. <fc #0000FF>Improving reproducibility of //Plasmodium falciparum// culture: a large-language-model-driven literature review and a parasite growth variability assessment of donor red blood cells</fc>. Malar J 25:46 [[https://www.ncbi.nlm.nih.gov/pubmed/41398683/|(PMID: 41398683)]].
+van der Ende J, Bezemer JM, Hanscheid T, Grobusch MP, Trueba G. 2025. <fc #0000FF>Amazon environment sharing featuring humans - dogs - capybaras and more. Adapting a one-health approach to leptospirosis prevention in indigenous riverine communities in Ecuador and beyond</fc>. New Microbes New Infect 68:101658 [[https://www.ncbi.nlm.nih.gov/pubmed/41278579/|(PMID: 41278579)]].
 Guerreiro-Nunes A, [[people:anacosta|Silva-Costa C]], [[people:jfsilva|Gomes-Silva J]], [[people:ramirez|Ramirez M]], [[people:jmelocristino|Melo-Cristino J]], Portuguese Group for the Study of Streptococcal Infections. 2025. <fc #0000FF>The resilience of vaccine serotypes in adult invasive pneumococcal disease in Portugal, 2018-2023</fc>. Sci Rep 15:40146. [[https://www.ncbi.nlm.nih.gov/pubmed/41249230/|(PMID: 41249230)]].
@@ Line 17: / Line 36: @@
 [[people:afriaes|Friães A]], Mamede R, Santos B, Marrão G, [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]]. 2025. <fc #0000FF>Increase of macrolide resistance among //Streptococcus pyogenes// pharyngitis driven by a //mef//(A)-//msr//(D)///emm//2-ST55 lineage in Portugal (2014-2019)</fc>. Antimicrob Agents Chemother 69:e0096825. [[https://www.ncbi.nlm.nih.gov/pubmed/41071123/|(PMID: 41071123)]]
+Piontkivska D, Jorge JMP, Mil-Homens D, Martins TM, Crespo P, Morales DP, Carvalho D, [[people:jmelocristino|Melo-Cristino J]], Sá-Leão R, Goldman GH, Silva Pereira C. 2025. <fc #0000FF>Hidden allies: decoding the core endohyphal bacteriome of //Aspergillus fumigatus//</fc>. Environ Microbiol Rep 17:e70153. [[https://www.ncbi.nlm.nih.gov/pubmed/40831189/|(PMID: 40831189)]]
 Hänscheid T, Carrasco J, Grobusch MP. 2025. Re: comparing large language models for antibiotic prescribing in different clinical scenarios: which performs better? Clin Microbiol Infect 31:2102–2103 [[https://www.ncbi.nlm.nih.gov/pubmed/40812548/|(PMID: 40812548)]]
 Firmino M de O, Forofontov M, Soares R, Louro RO, Alberto J. Martín-Rodríguez, [[people:ramirez|Ramirez M]], Paquete CM. 2025. <fc #0000FF>Polyphasic discrimination of //Shewanella seohaensis// from closely related species and a whole-genome multilocus (wgMLST) scheme for the evaluation of diversity within this //Shewanella// clade</fc>. Appl Environ Microbiol 91:e0118925. [[https://www.ncbi.nlm.nih.gov/pubmed/40801780/|(PMID: 40801780)]]
+Elias R, Phelan JE, Lito L, Caneiras C, Marques C, Pinto M, Cavaco-Silva P, Ferreira H, Pomba C, Da Silva GJ, Saavedra MJ, Coelho R, Lourinho R, Gonçalves L, Hinthong W, Rosa MJ, [[people:jmelocristino|Melo-Cristino J]], Campino S, Portugal I, Duarte A, Clark TG, Perdigão J. 2025. <fc #0000FF>Genome-wide analysis and longitudinal study of //Klebsiella pneumoniae// in Portugal: tracing the evolution and spread of carbapenem resistance</fc>. Int J Antimicrob Agents 66:107583. [[https://www.ncbi.nlm.nih.gov/pubmed/40750043/|(PMID: 40750043)]]
 Schnyder JL, Bache BE, Hoogakker M, Van De Ruit M, Zonneveld R, Hermans SM, Stijnis C, Van Vugt M, Hänscheid T, Van Hest RM, Goorhuis A, de Jong HK, Grobusch MP. 2025. <fc #0000FF>Malaria recrudescence after artemether-lumefantrine treatment in travellers- a hospital-based observational study and literature review</fc>. Trop Dis, Travel Med Vaccines 11:19. [[https://www.ncbi.nlm.nih.gov/pubmed/40619429/|(PMID: 40619429)]]
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 Stanley S, [[people:anacosta|Silva-Costa C]], [[people:jfsilva|Gomes-Silva J]], [[people:jmelocristino|Melo-Cristino J]], Malley R, [[people:ramirez|Ramirez M]]. 2025. <fc #0000FF>CC180 clade dynamics do not universally explain //Streptococcus pneumoniae// serotype 3 persistence post-vaccine: a global comparative population genomics study</fc>. Ebiomedicine 117:105781. [[https://www.ncbi.nlm.nih.gov/pubmed/40472804/|(PMID: 40472804)]]
-Carvalho BT, Meirinhos SV, Domingos GJ, Peixoto S, [[people:jmelocristino|Melo-Cristino J]]. 2025. <fc #0000FF>Unseen but unforgettable - refractive bacilli in the Gram stain of a muscular abscess</fc>. Eur J Clin Microbiol Infect Dis //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/40307630/|(PMID: 40307630)]]
+Carvalho BT, Meirinhos SV, Domingos GJ, Peixoto S, [[people:jmelocristino|Melo-Cristino J]]. 2025. <fc #0000FF>Unseen but unforgettable - refractive bacilli in the Gram stain of a muscular abscess</fc>. Eur J Clin Microbiol Infect Dis 44:1749-1752 [[https://www.ncbi.nlm.nih.gov/pubmed/40307630/|(PMID: 40307630)]]
 Schnyder JL, de Jong HK, Bache EB, van Hest RM, Bélard S, Hanscheid T, Kremsner PG, Grobusch MP. 2025. <fc #0000FF>Which trial do we need? A randomised controlled study to compare the protective efficacy of early post-exposure discontinuation versus standard atovaquone-proguanil malaria prophylaxis in a human //Plasmodium falciparum// challenge model</fc>. Clin Microbiol Infect 31:1618–1622. [[https://www.ncbi.nlm.nih.gov/pubmed/40294866/|(PMID: 40294866)]]