Differences

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--- publications [2025/12/22 14:58]
ramirez [2025]
+++ publications [2026/04/01 09:21] (current)
ramirez [2025]
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 ====== Publications ======
-===== 2025  =====
+===== 2026  =====
-van der Ende J, Dávila MV, Menting S, Sáenz FE, Hanscheid T, Schallig HDFH, Grobusch MP. 2025. <fc #0000FF>Asymptomatic parasitaemia in a malaria pre-elimination setting in the Putumayo area of the Ecuadorian Amazon basin</fc>. Malar J //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/41413552/|(PMID: 41413552)]].
+Mamede R, Vila-Cerqueira P, Carriço JA, [[people:ramirez|Ramirez M]]. 2026. <fc #0000FF>chewBBACA 3: lowering the barrier for scalable and detailed whole- and core-genome multilocus sequence typing</fc>. Genome Med //In press// [[https://doi.org/10.1186/s13073-026-01625-x| (doi:10.1186/s13073-026-01625-x).]]
-Mahomed SM, Hanscheid T, Almeida Y, Grobusch MP, Rebelo M. 2025. <fc #0000FF>Improving reproducibility of //Plasmodium falciparum// culture: a large-language-model-driven literature review and a parasite growth variability assessment of donor red blood cells</fc>. Malar J //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/41398683/|(PMID: 41398683)]].
+Tsiodras S, Gupta N, Hanscheid T, Jokelainen P, Drexler JF, Barac A, Gkrania-Klotsas E, Mora-Rillo M, Bulescu C, Paño-Pardo JR, Lescure FX, Grobusch MP. 2026. <fc #0000FF>Language, trust, and the polio endgame: words matter in vaccine communication</fc>. Clin Microbiol Infect S1198-743X(26)00081–9. [[https://www.ncbi.nlm.nih.gov/pubmed/41765092/|(PMID: 41765092)]].
+Martins ER, Forofontov M, Mota Freitas J, [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]]. 2026. <fc #0000FF>Two //Streptococcus agalactiae// ST283 invasive infections in Portugal raise the possibility of the emergence of this unusual lineage in Europe</fc>. Front Microbiol 16: 1712362. [[https://www.ncbi.nlm.nih.gov/pubmed/41669694/|(PMID: 41669694)]].
+Boto CM, Raposo Carneiro S, Ramalho M, Passos Coelho I, Moitinho de Almeida I, Ferreira C, Tomé ML, Sousa Dias M, Araújo Carvalho A, Machado R, Oliveira M, Seruca M, Boto L, Prata F, Penteado R, Carmo A, Rodrigues F, Tavares M, Rebelo S, Ribeiro M, [[people:jfsilva|Gomes-Silva J]], [[people:afriaes|Friães A]], [[people:anacosta|Silva-Costa C]], [[people:ramirez|Ramirez M]], [[people:jmelocristino|Melo-Cristino J]], Pereira Lemos A, Gouveia C. 2025. <fc #0000FF>Increasingly frequent parapneumonic empyema by group A streptococcus is more severe than by //Streptococcus pneumoniae//</fc>. Pediatr Infect Dis J 45:312–316 [[https://www.ncbi.nlm.nih.gov/pubmed/41334964/|(PMID: 41334964)]].
+===== 2025  =====
+van der Ende J, Dávila MV, Menting S, Sáenz FE, Hanscheid T, Schallig HDFH, Grobusch MP. 2025. <fc #0000FF>Asymptomatic parasitaemia in a malaria pre-elimination setting in the Putumayo area of the Ecuadorian Amazon basin</fc>. Malar J 25:52 [[https://www.ncbi.nlm.nih.gov/pubmed/41413552/|(PMID: 41413552)]].
-Boto CM, Raposo Carneiro S, Ramalho M, Passos Coelho I, Moitinho de Almeida I, Ferreira C, Tomé ML, Sousa Dias M, Araújo Carvalho A, Machado R, Oliveira M, Seruca M, Boto L, Prata F, Penteado R, Carmo A, Rodrigues F, Tavares M, Rebelo S, Ribeiro M, [[people:jfsilva|Gomes-Silva J]], [[people:afriaes|Friães A]], [[people:anacosta|Silva-Costa C]], [[people:ramirez|Ramirez M]], [[people:jmelocristino|Melo-Cristino J]], Pereira Lemos A, Gouveia C. 2025. <fc #0000FF>Increasingly frequent parapneumonic empyema by group A streptococcus is more severe than by //Streptococcus pneumoniae//</fc>. Pediatr Infect Dis J //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/41334964/|(PMID: 41334964)]].
+Mahomed SM, Hanscheid T, Almeida Y, Grobusch MP, Rebelo M. 2025. <fc #0000FF>Improving reproducibility of //Plasmodium falciparum// culture: a large-language-model-driven literature review and a parasite growth variability assessment of donor red blood cells</fc>. Malar J 25:46 [[https://www.ncbi.nlm.nih.gov/pubmed/41398683/|(PMID: 41398683)]].
 van der Ende J, Bezemer JM, Hanscheid T, Grobusch MP, Trueba G. 2025. Amazon environment sharing featuring humans - dogs - capybaras and more. Adapting a one-health approach to leptospirosis prevention in indigenous riverine communities in Ecuador and beyond. New Microbes New Infect 68:101658 [[https://www.ncbi.nlm.nih.gov/pubmed/41278579/|(PMID: 41278579)]].
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 [[people:afriaes|Friães A]], Mamede R, Santos B, Marrão G, [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]]. 2025. <fc #0000FF>Increase of macrolide resistance among //Streptococcus pyogenes// pharyngitis driven by a //mef//(A)-//msr//(D)///emm//2-ST55 lineage in Portugal (2014-2019)</fc>. Antimicrob Agents Chemother 69:e0096825. [[https://www.ncbi.nlm.nih.gov/pubmed/41071123/|(PMID: 41071123)]]
+Piontkivska D, Jorge JMP, Mil-Homens D, Martins TM, Crespo P, Morales DP, Carvalho D, [[people:jmelocristino|Melo-Cristino J]], Sá-Leão R, Goldman GH, Silva Pereira C. 2025. <fc #0000FF>Hidden allies: decoding the core endohyphal bacteriome of //Aspergillus fumigatus//</fc>. Environ Microbiol Rep 17:e70153. [[https://www.ncbi.nlm.nih.gov/pubmed/40831189/|(PMID: 40831189)]]
 Hänscheid T, Carrasco J, Grobusch MP. 2025. Re: comparing large language models for antibiotic prescribing in different clinical scenarios: which performs better? Clin Microbiol Infect 31:2102–2103 [[https://www.ncbi.nlm.nih.gov/pubmed/40812548/|(PMID: 40812548)]]
 Firmino M de O, Forofontov M, Soares R, Louro RO, Alberto J. Martín-Rodríguez, [[people:ramirez|Ramirez M]], Paquete CM. 2025. <fc #0000FF>Polyphasic discrimination of //Shewanella seohaensis// from closely related species and a whole-genome multilocus (wgMLST) scheme for the evaluation of diversity within this //Shewanella// clade</fc>. Appl Environ Microbiol 91:e0118925. [[https://www.ncbi.nlm.nih.gov/pubmed/40801780/|(PMID: 40801780)]]
+Elias R, Phelan JE, Lito L, Caneiras C, Marques C, Pinto M, Cavaco-Silva P, Ferreira H, Pomba C, Da Silva GJ, Saavedra MJ, Coelho R, Lourinho R, Gonçalves L, Hinthong W, Rosa MJ, [[people:jmelocristino|Melo-Cristino J]], Campino S, Portugal I, Duarte A, Clark TG, Perdigão J. 2025. <fc #0000FF>Genome-wide analysis and longitudinal study of //Klebsiella pneumoniae// in Portugal: tracing the evolution and spread of carbapenem resistance</fc>. Int J Antimicrob Agents 66:107583. [[https://www.ncbi.nlm.nih.gov/pubmed/40750043/|(PMID: 40750043)]]
 Schnyder JL, Bache BE, Hoogakker M, Van De Ruit M, Zonneveld R, Hermans SM, Stijnis C, Van Vugt M, Hänscheid T, Van Hest RM, Goorhuis A, de Jong HK, Grobusch MP. 2025. <fc #0000FF>Malaria recrudescence after artemether-lumefantrine treatment in travellers- a hospital-based observational study and literature review</fc>. Trop Dis, Travel Med Vaccines 11:19. [[https://www.ncbi.nlm.nih.gov/pubmed/40619429/|(PMID: 40619429)]]
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 Stanley S, [[people:anacosta|Silva-Costa C]], [[people:jfsilva|Gomes-Silva J]], [[people:jmelocristino|Melo-Cristino J]], Malley R, [[people:ramirez|Ramirez M]]. 2025. <fc #0000FF>CC180 clade dynamics do not universally explain //Streptococcus pneumoniae// serotype 3 persistence post-vaccine: a global comparative population genomics study</fc>. Ebiomedicine 117:105781. [[https://www.ncbi.nlm.nih.gov/pubmed/40472804/|(PMID: 40472804)]]
-Carvalho BT, Meirinhos SV, Domingos GJ, Peixoto S, [[people:jmelocristino|Melo-Cristino J]]. 2025. <fc #0000FF>Unseen but unforgettable - refractive bacilli in the Gram stain of a muscular abscess</fc>. Eur J Clin Microbiol Infect Dis //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/40307630/|(PMID: 40307630)]]
+Carvalho BT, Meirinhos SV, Domingos GJ, Peixoto S, [[people:jmelocristino|Melo-Cristino J]]. 2025. <fc #0000FF>Unseen but unforgettable - refractive bacilli in the Gram stain of a muscular abscess</fc>. Eur J Clin Microbiol Infect Dis 44:1749-1752 [[https://www.ncbi.nlm.nih.gov/pubmed/40307630/|(PMID: 40307630)]]
 Schnyder JL, de Jong HK, Bache EB, van Hest RM, Bélard S, Hanscheid T, Kremsner PG, Grobusch MP. 2025. <fc #0000FF>Which trial do we need? A randomised controlled study to compare the protective efficacy of early post-exposure discontinuation versus standard atovaquone-proguanil malaria prophylaxis in a human //Plasmodium falciparum// challenge model</fc>. Clin Microbiol Infect 31:1618–1622. [[https://www.ncbi.nlm.nih.gov/pubmed/40294866/|(PMID: 40294866)]]
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 Pereira SM, Grobusch MP, Hänscheid T. 2025. <fc #0000FF>How a GPT-aided survey reveals a medical student’s misunderstanding of the term “artemisinin resistance.”</fc> New Microbes New Infect 63:101552. [[https://www.ncbi.nlm.nih.gov/pubmed/39759404/|(PMID: 39759404)]]
+Hänscheid T, Grobusch MP. 2025. <fc #0000FF>Is strong artificial intelligence skepticism justified or counterproductive?</fc> Clin Infect Dis: Off Publ Infect Dis Soc Am 80:1166–1167. [[https://www.ncbi.nlm.nih.gov/pubmed/39219480/|(PMID: 39219480)]]
 ===== 2024  =====
@@ Line 58: / Line 71: @@
 Pool L, Ruiz Del Portal Luyten C, van der Pluijm RW, Soentjens P, Hänscheid T, Grobusch MP, Visser BJ. 2024. <fc #0000FF>Dissemination and outcome reporting bias in clinical malaria intervention trials: a cross-sectional analysis</fc>. Malar J 23:293. [[https://www.ncbi.nlm.nih.gov/pubmed/39350104/|(PMID: 39350104)]]
-Hänscheid T, Grobusch MP. 2024. <fc #0000FF>Is strong AI skepticism justified or counterproductive?</fc> Clin Infect Dis ciae443. //In press// [[https://www.ncbi.nlm.nih.gov/pubmed/39219480/|(PMID: 39219480)]]
 Barros Pinto MP. 2024. <fc #0000FF>//Bordetella pertussis// infection</fc>. Pediatr Pulmonol 59:3752–3753. [[https://www.ncbi.nlm.nih.gov/pubmed/39189943/|(PMID: 39189943)]]