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--- people:ramirez [2020/09/21 11:32]
ramirez q
+++ people:ramirez [2026/01/22 10:55] (current)
ramirez [Previous Positions]
@@ Line 13: / Line 13: @@
 </html>
 ===== Current Position =====
-**Associate Professor** ("com agregação")\\
+**Full Professor** \\
 Instituto de Microbiologia,[[http://www.fm.ul.pt/|Faculdade de Medicina de Lisboa]], [[http://www.ul.pt/|Universidade de Lisboa]], Lisboa, Portugal\\
-**Laboratory Head**\\
-[[http://www.imm.fm.ul.pt/web/imm/molecularmicrobiologyandinfection|Molecular Microbiology and Infection Unit]], [[http://www.imm.fm.ul.pt/web/imm/home|Instituto de Medicina Molecular]], Lisboa, Portugal\\
 ===== Previous Positions =====
+**Associate Professor of Microbiology**, Instituto de Microbiologia,[[http://www.medicina.ulisboa.pt/|Faculdade de Medicina de Lisboa]], [[http://www.ulisboa.pt//|Universidade de Lisboa]], Lisboa, Portugal\\
 **Assistant Professor of Microbiology**, Instituto de Microbiologia,[[http://www.medicina.ulisboa.pt/|Faculdade de Medicina de Lisboa]], [[http://www.ulisboa.pt//|Universidade de Lisboa]], Lisboa, Portugal\\
 **Post-Doc**, [[http://www.itqb.unl.pt/|Instituto de Tecnologia Química e Biológica]], Oeiras, Portugal\\
@@ Line 32: / Line 31: @@
 [[http://patlas.site|pAtlas]] - A plasmid database developed in the lab to facilitate plasmid detection in high-throughput data and the exploration of plasmid space.
-[[http://www.phyloviz.net|PHYLOViZ]] - a software allowing the visualization of accessory epidemiological data together with evolutionary hypothesis derived from MLST, MLVA or SNP data developed in the lab in collaboration with INESC.
+[[http://www.phyloviz.net|PHYLOViZ]] - a software allowing the visualization of accessory epidemiological data together with evolutionary hypothesis derived from MLST, MLVA or SNP data developed in the lab in collaboration with INESC. PHYLOViZ uses the goeBURST algorithm, a globally optimized implementation of the eBURST algorithm, to create minimum spanning tree like representations of the data. Both a desktop JAVA implementation and an online version are available.
 [[http://www.comparingpartitions.info|Comparing Partitions]] - a site developed in the lab for comparing classification schemes\\
-[[http://goeburst.phyloviz.net/|goeBURST]] - a globally optimized implementation of the eBURST algorithm for the analysis of MLST data developed in the lab in collaboration with INESC.
 ===== Contacts =====
@@ Line 48: / Line 45: @@
 ===== Publications =====
-[[http://orcid.org/0000-0002-4084-6233|{{:people:orcid-icon.png}}]][[http://www.scopus.com/inward/authorDetails.url?authorID=7201568476&partnerID=MN8TOARS|{{:people:scopus.ico}}]][[http://www.researcherid.com/rid/B-4993-2008|{{:people:researcherid.ico}}]][[http://scholar.google.com/citations?user=EWHFzOAAAAAJ&hl=en|{{:people:googlescholar.jpg?100}}]]
+[[http://orcid.org/0000-0002-4084-6233|{{:people:orcid-icon.png}}]][[http://www.scopus.com/inward/authorDetails.url?authorID=7201568476&partnerID=MN8TOARS|{{:people:scopus.ico}}]][[https://www.webofscience.com/wos/author/record/334070|{{:people:researcherid.ico}}]][[http://scholar.google.com/citations?user=EWHFzOAAAAAJ&hl=en|{{:people:googlescholar.jpg?100}}]]
-[[https://www.ncbi.nlm.nih.gov/pubmed?term=ramirez+m+AND+(de+lencastre+OR+tomasz+a+OR+melo-cristino+OR+carrico+ja+OR+carri%C3%A7o+ja+OR+pinto+f+OR+aguiar+s+OR+frias+mj+OR+margarit+i)|{{:people:pubmedimage1.jpg?100|}}]]
+[[https://pubmed.ncbi.nlm.nih.gov/?term=ramirez+m+AND+%28de+lencastre+OR+tomasz+a+OR+melo-cristino+OR+friaes+A+OR+carrico+ja+OR+carri%C3%A7o+ja+OR+pinto+f+OR+aguiar+s+OR+frias+mj+OR+margarit+i+OR+mota+mm+OR+firmino+mdo%29&sort=date|{{:people:pubmedimage1.jpg?100|}}]][[https://www.cienciavitae.pt/9C1C-F2A2-4226|{{:people:cienciavitae.jpg?200|}}]]
 **Publications after 2003:**