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publications [2019/12/17 19:24] cmendes [2019] |
publications [2020/10/23 12:02] ramirez [2020] |
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====== Publications ====== | ====== Publications ====== | ||
- | ===== 2019 ===== | + | ===== 2020 ===== |
- | Fleres G, Couto N, Schuele L, Chlebowicz M A, [[people:cmendes|Mendes C I]], van der Sluis L W M, Rossen J W A, Friedrich A W, García-Cobos S. 2019. <fc #0000FF>Detection of a novel //mcr-5.4// gene variant in hospital tap water by shotgun metagenomic sequencing</fc>. J Antimicrob Chemother 74: 3626–3628 [[https://www.ncbi.nlm.nih.gov/pubmed/31504580|(PMID: 31504580)]] | + | Mamede R, Vila-Cerqueira P, Silva M, [[people:jcarrico|Carriço JA]], [[people:ramirez|Ramirez M]]. 2020. <fc #0000FF>Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas</fc>. Nucleic Acids Res //In press//. [[http://www.ncbi.nlm.nih.gov/pubmed/33068420|(PMID: 33068420)]] |
- | Espadinha D, Sobral R G, [[people:cmendes|Mendes C I]], Méric G, Sheppard S K, [[people:jcarrico|Carriço JA]], de Lencastre H, Miragaia M. 2019. <fc #0000FF>Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of // Staphylococcus epidermidis// Clonal Lineages</fc>. Front Microbiol 10: 1971. [[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6719527/|(PMID: 31507574)]] | + | Barros Pinto MP, Marques G, [[people:jmelocristino|Melo-Cristino J]]. <fc #0000FF>Promastigotes of //Leishmania// spp. developing in human bone marrow in vitro</fc>. Br J Haematol //In press//. [[http://www.ncbi.nlm.nih.gov/pubmed/32945533|(PMID: 32945533)]] |
+ | Dubbink JH, Branco TM, Kamara KB, Bangura JS, Wehrens E, Falama AM, Goorhuis A, Jørgensen PB, Sevalie SS, Hänscheid T, Grobusch MP. 2020. <fc #0000FF>COVID-19 treatment in sub-Saharan Africa: If the best is not available, the available becomes the best</fc>. Travel Med Infect Dis 37:101878. [[http://www.ncbi.nlm.nih.gov/pubmed/32927051|(PMID: 32927051)]] | ||
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+ | Pinto MPB, [[people:jmelocristino|Melo-Cristino J]]. <fc #0000FF>Sporogonic cycle of //Plasmodium falciparum// in a human blood. sample</fc> Am J Hematol //In press//. [[http://www.ncbi.nlm.nih.gov/pubmed/32857861|(PMID: 32857861)]] | ||
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+ | Grobusch MP, van der Fluit KS, Stijnis C, De Pijper CA, Hänscheid T, Gautret P, Schlagenhauf P, Goorhuis A. 2020. <fc #0000FF>Can dengue virus be sexually transmitted?</fc> Travel Med Infect Dis 101753. [[http://www.ncbi.nlm.nih.gov/pubmed/32473313|(PMID: 32473313)]] | ||
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+ | García-Fernández S, García-Castillo M, [[people:jmelocristino|Melo-Cristino J]], Pinto MF, Gonçalves E, Alves V, Vieira AR, Ramalheira E, Sancho L, Diogo J, Ferreira R, Silva D, Chaves C, Pássaro L, Paixão L, Cantón R, STEP Study Group. 2020. <fc #0000FF>In vitro activity of ceftolozane-tazobactam against Enterobacterales and Pseudomonas aeruginosa causing urinary, intra-abdominal and lower respiratory tract infections in intensive care units in Portugal: The STEP multicenter study</fc>. Int J Antimicrob Agents 55:105887. [[http://www.ncbi.nlm.nih.gov/pubmed/31926283|(PMID: 31926283)]] | ||
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+ | González-Díaz A, [[people:mpmachado|Machado MP]], Càmara J, Yuste J, Varon E, Domenech M, Del Grosso M, Marimón JM, Cercenado E, Larrosa N, Quesada MD, Fontanals D, El-Mniai A, Cubero M, [[people:jcarrico|Carriço JA]], Martí S, [[people:ramirez|Ramirez M]], Ardanuy C. 2020. <fc #0000FF>Two multi-fragment recombination events resulted in the β-lactam-resistant serotype 11A-ST6521 related to Spain9V-ST156 pneumococcal clone spreading in south-western Europe, 2008 to 2016</fc>. Euro Surveill 25:pii=1900457.[[http://www.ncbi.nlm.nih.gov/pubmed/32347199|(PMID: 32347199)]] | ||
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+ | [[people:cmendes|Mendes CI]],Lizarazo E, [[people:mpmachado|Machado MP]], Silva DN, Tami A, [[people:ramirez|Ramirez M]], Couto N, Rossen JWA, [[people:jcarrico|Carriço JA]]. 2020. <fc #0000FF>DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing</fc>. Microb Genom 6:e000328. [[http://www.ncbi.nlm.nih.gov/pubmed/32134380|(PMID: 32134380)]] | ||
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+ | Hänscheid T, Valadas E, Grobusch MP. 2020. <fc #0000FF>Coronavirus 2019-nCoV: Is the genie already out of the bottle?</fc> Travel Med Infect Dis 101577. [[http://www.ncbi.nlm.nih.gov/pubmed/32044388|(PMID: 32044388)]] | ||
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+ | Hänscheid T, Vieira S, Ferreira P, Carvalho T, Belo S, Grobusch MP. 2020. <fc #0000FF>The fluorescent acid-fast stain, auramine-O, stains schistosome eggs and may be an aid for detection. An old technique with a useful future?</fc> Travel Med Infect Dis 35:101569. [[http://www.ncbi.nlm.nih.gov/pubmed/32006658|(PMID: 32006658)]] | ||
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+ | van der Linden M, Mamede R, Levina N, Helwig P, Vila-Cerqueira P, [[people:jcarrico|Carriço JA]], [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], [[people:emartins|Martins ER]]. 2020. <fc #0000FF>Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany</fc>. J Antimicrob Chemother. 75:296–299. [[http://www.ncbi.nlm.nih.gov/pubmed/31740946|(PMID: 31740946)]] | ||
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+ | Hänscheid T, Grobusch MP. 2020. <fc #0000FF>Coenzyme Q10 and cerebral malaria in mice: Questionable interpretations, improbable usefulness in humans</fc>. Parasitol Int 74:101969. [[http://www.ncbi.nlm.nih.gov/pubmed/31421269|(PMID: 31421269)]] | ||
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+ | ===== 2019 ===== | ||
[[people:afriaes|Friães A]], [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], Portuguese Group for the Study of Streptococcal Infections. 2019. <fc #0000FF>Changes in //emm// types and superantigen gene content of //Streptococcus pyogenes// causing invasive infections in Portugal</fc>. Sci Rep 9:18051. [[http://www.ncbi.nlm.nih.gov/pubmed/31792274|(PMID: 31792274)]] | [[people:afriaes|Friães A]], [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], Portuguese Group for the Study of Streptococcal Infections. 2019. <fc #0000FF>Changes in //emm// types and superantigen gene content of //Streptococcus pyogenes// causing invasive infections in Portugal</fc>. Sci Rep 9:18051. [[http://www.ncbi.nlm.nih.gov/pubmed/31792274|(PMID: 31792274)]] | ||
- | van der Linden M, Mamede R, Levina N, Helwig P, Vila-Cerqueira P, Carriço JA, [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], [[people:emartins|Martins ER]]. 2019. <fc #0000FF>Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany</fc>. J Antimicrob Chemother. //In press//. [[http://www.ncbi.nlm.nih.gov/pubmed/31740946|(PMID: 31740946)]] | + | Hänscheid T, Schlagenhauf P, Grobusch MP. 2019. Atovaquone/proguanil for malaria chemoprophylaxis - Could a difference in susceptibility during hepatic development explain the need to continue drug intake for 7 days post-exposure? Travel Med Infect Dis 101527. [[http://www.ncbi.nlm.nih.gov/pubmed/31759143|(PMID: 31759143)]] |
Duque-Valencia J, Forero-Muñoz NR, Díaz FJ, [[people:emartins|Martins E]], Barato P, Ruiz-Saenz J. 2019. <fc #0000FF>Phylogenetic evidence of the intercontinental circulation of a canine distemper virus lineage in the Americas</fc>. Sci Rep 9:15747. [[http://www.ncbi.nlm.nih.gov/pubmed/31673120|(PMID: 31673120)]] | Duque-Valencia J, Forero-Muñoz NR, Díaz FJ, [[people:emartins|Martins E]], Barato P, Ruiz-Saenz J. 2019. <fc #0000FF>Phylogenetic evidence of the intercontinental circulation of a canine distemper virus lineage in the Americas</fc>. Sci Rep 9:15747. [[http://www.ncbi.nlm.nih.gov/pubmed/31673120|(PMID: 31673120)]] | ||
- | Hänscheid T, Grobusch MP. 2019. <fc #0000FF>Coenzyme Q10 and cerebral malaria in mice: Questionable interpretations, improbable usefulness in humans</fc>. Parasitol Int //In press//. [[http://www.ncbi.nlm.nih.gov/pubmed/31421269|(PMID: 31421269)]] | + | Fleres G, Couto N, Schuele L, Chlebowicz M A, [[people:cmendes|Mendes C I]], van der Sluis L W M, Rossen J W A, Friedrich A W, García-Cobos S. 2019. <fc #0000FF>Detection of a novel //mcr-5.4// gene variant in hospital tap water by shotgun metagenomic sequencing</fc>. J Antimicrob Chemother 74: 3626–3628 [[https://www.ncbi.nlm.nih.gov/pubmed/31504580|(PMID: 31504580)]] |
+ | |||
+ | Espadinha D, Sobral R G, [[people:cmendes|Mendes C I]], Méric G, Sheppard S K, [[people:jcarrico|Carriço JA]], de Lencastre H, Miragaia M. 2019. <fc #0000FF>Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of // Staphylococcus epidermidis// Clonal Lineages</fc>. Front Microbiol 10: 1971. [[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6719527/|(PMID: 31507574)]] | ||
Dias O, Saraiva J, Faria C, [[people:ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #0000FF>iDS372, a phenotypically reconciled model for the metabolism of //Streptococcus pneumoniae// strain R6</fc>. Front Microbiol 10:1283. [[http://www.ncbi.nlm.nih.gov/pubmed/31293525|(PMID: 31293525)]] | Dias O, Saraiva J, Faria C, [[people:ramirez|Ramirez M]], Pinto F, Rocha I. 2019. <fc #0000FF>iDS372, a phenotypically reconciled model for the metabolism of //Streptococcus pneumoniae// strain R6</fc>. Front Microbiol 10:1283. [[http://www.ncbi.nlm.nih.gov/pubmed/31293525|(PMID: 31293525)]] | ||
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Björnsdóttir ES, [[people:emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #0000FF>Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</fc>. Pediatr Infect Dis J. 38:620–624. [[http://www.ncbi.nlm.nih.gov/pubmed/30299423|(PMID: 30299423)]] | Björnsdóttir ES, [[people:emartins|Martins ER]], Erlendsdóttir H, Haraldsson G, [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], Kristinsson KG. 2019. <fc #0000FF>Group B streptococcal neonatal and early infancy infections in Iceland 1976 - 2015</fc>. Pediatr Infect Dis J. 38:620–624. [[http://www.ncbi.nlm.nih.gov/pubmed/30299423|(PMID: 30299423)]] | ||
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+ | Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2019. <fc #0000FF>A modified case definition to facilitate essential hospital care during Ebola outbreaks</fc>. Clin Infect Dis. 68:1763–1768. [[http://www.ncbi.nlm.nih.gov/pubmed/30239602|(PMID: 30239602)]] | ||
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+ | Hänscheid T, Grobusch MP. 2019. <fc #0000FF>Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</fc> Travel Med Infect Dis. 28:104. [[http://www.ncbi.nlm.nih.gov/pubmed/30030070|(PMID: 30030070)]] | ||
===== 2018 ===== | ===== 2018 ===== | ||
Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #0000FF>First description of colistin and tigecycline-resistant //Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</fc>. Antibiotics 7. [[https://doi.org/10.3390/antibiotics7040096|doi:10.3390/antibiotics7040096]] [[http://www.ncbi.nlm.nih.gov/pubmed/30404152|(PMID: 30404152)]] | Caneiras C, Calisto F, Jorge da Silva G, Lito L, [[people:jmelocristino|Melo-Cristino J]], Duarte A. 2018. <fc #0000FF>First description of colistin and tigecycline-resistant //Acinetobacter baumannii// producing KPC-3 carbapenemase in Portugal</fc>. Antibiotics 7. [[https://doi.org/10.3390/antibiotics7040096|doi:10.3390/antibiotics7040096]] [[http://www.ncbi.nlm.nih.gov/pubmed/30404152|(PMID: 30404152)]] | ||
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[[people:cpato|Pato C]], [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], [[people:afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #0000FF>//Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</fc>. Front Microbiol 9:2372.[[http://www.ncbi.nlm.nih.gov/pubmed/30356787|(PMID: 30356787)]] | [[people:cpato|Pato C]], [[people:jmelocristino|Melo-Cristino J]], [[people:ramirez|Ramirez M]], [[people:afriaes|Friães A]], Portuguese Group for the Study of Streptococcal Infections. 2018. <fc #0000FF>//Streptococcus pyogenes// causing skin and soft tissue infections are enriched in the recently emerged //emm//89 clade 3 and are not associated with abrogation of CovRS</fc>. Front Microbiol 9:2372.[[http://www.ncbi.nlm.nih.gov/pubmed/30356787|(PMID: 30356787)]] | ||
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- | Huizenga E, van der Ende J, Zwinkels N, Jimissa A, van der Ende-Bouwman C, van Rooijen R, Kargbo B, Agnandji ST, Hänscheid T, Goorhuis A, Grobusch MP. 2018. <fc #0000FF>A modified case definition to facilitate essential hospital care during Ebola outbreaks</fc>. Clin Infect Dis. //In press// [[http://www.ncbi.nlm.nih.gov/pubmed/30239602|(PMID: 30239602)]] [[https://doi.org/10.1093/cid/ciy798|doi:10.1093/cid/ciy798]] | ||
Branco A, [[people:jmelocristino|Melo-Cristino J]]. 2018. <fc #0000FF>Extreme parasitemia in //P. falciparum// malaria</fc>. Blood 132:868. [[http://www.ncbi.nlm.nih.gov/pubmed/30139832|(PMID: 30139832)]] | Branco A, [[people:jmelocristino|Melo-Cristino J]]. 2018. <fc #0000FF>Extreme parasitemia in //P. falciparum// malaria</fc>. Blood 132:868. [[http://www.ncbi.nlm.nih.gov/pubmed/30139832|(PMID: 30139832)]] | ||
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Branco A, Francisco D, Hänscheid T. 2018. <fc #0000FF>Is there a “normal” oxygen concentration for in vitro //Plasmodium// cultures?</fc> Trends Parasitol 34:811–812. [[http://www.ncbi.nlm.nih.gov/pubmed/30049603|(PMID: 30049603)]] | Branco A, Francisco D, Hänscheid T. 2018. <fc #0000FF>Is there a “normal” oxygen concentration for in vitro //Plasmodium// cultures?</fc> Trends Parasitol 34:811–812. [[http://www.ncbi.nlm.nih.gov/pubmed/30049603|(PMID: 30049603)]] | ||
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- | Hänscheid T, Grobusch MP. 2018. <fc #0000FF>Could antibiotic treatment of traveller’s diarrhoea even prolong elimination of pathogens?</fc> Travel Med Infect Dis. //In press// [[http://www.ncbi.nlm.nih.gov/pubmed/30030070|(PMID: 30030070)]] | ||
Couto N, Schuele L, Raangs EC, [[people:mpmachado|Machado MP]], [[people:cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:ramirez|Ramirez M]],[[people:jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</fc>. Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w.[[http://www.ncbi.nlm.nih.gov/pubmed/30213965 |(PMID: 30213965)]] | Couto N, Schuele L, Raangs EC, [[people:mpmachado|Machado MP]], [[people:cmendes|Mendes CI]], Jesus TF, Chlebowicz M, Rosema S, [[people:ramirez|Ramirez M]],[[people:jcarrico|Carriço JA]], Autenrieth IB, Friedrich AW, Peter S, Rossen JW.<fc #0000FF> Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens</fc>. Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w.[[http://www.ncbi.nlm.nih.gov/pubmed/30213965 |(PMID: 30213965)]] |