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+ | ===== Bio ===== | ||
+ | |||
+ | **Full Name**: João André Nogueira Custódio Carriço\\ | ||
+ | **Degrees**: | ||
+ | * Applied Chemistry, Biotechnology - FCT/UNL\\ | ||
+ | * PhD in Biology:"New perspectives in Microbial Typing"\\ | ||
+ | |||
+ | ===== Current Position ===== | ||
+ | **Assistant Researcher**\\ | ||
+ | [[http://www.imm.fm.ul.pt/web/imm/molecularmicrobiologyandinfection|Molecular Microbiology and Infection Unit]], [[http://www.imm.fm.ul.pt/web/imm/home|Instituto de Medicina Molecular]]\\ | ||
+ | Instituto de Microbiologia,[[http://www.fm.ul.pt/|Faculdade de Medicina de Lisboa]], Universidade de Lisboa\\ | ||
+ | |||
+ | **Invited Researcher** \\ | ||
+ | [[http://kdbio.inesc-id.pt|Knowledge Discovery and Bioinformatics group (KDBIO)]]\\ | ||
+ | [[http://www.inesc-id.pt|Instituto de Engenharia de Sistemas e Computadores: Investigação e Desenvolvimento (INESC-ID)]] | ||
+ | ===== Research Interests ===== | ||
+ | **Biology** : Microbiology, Population Evolutionary Genetics, Molecular Epidemiology, Microbial Typing methods\\ | ||
+ | **Mathematics** : Univariate/Multivariate Statistics for Data Analysis, Graph theory, Resampling methods\\ | ||
+ | **Informatics** : Matlab, Perl, Data Mining, Databases: Postgresql, Web-Based Interfaces: PHP and HTML/CSS, XML schemas.\\ | ||
+ | |||
+ | |||
+ | ===== Contacts ===== | ||
+ | |||
+ | **Emails**: | ||
+ | * jcarrico_at_fm.ul.pt (replace _at_ by @)\\ | ||
+ | * jcarrico_at_kdbio.inesc-id.pt (replace _at_ by @)\\ | ||
+ | **Twitter**: | ||
+ | * jacarrico [[http://twitter.com/jacarrico|Twitter homepage]] | ||
+ | |||
+ | |||
+ | ===== Publications ===== | ||
+ | <html> | ||
+ | <ol> | ||
+ | <li value="18"> Francisco AP, Bugalho M, Ramirez M, <U>Carrico JA.</U>, <B>Global Optimal eBURST analysis of Multilocus typing data using a graphic matroid approach</B>,BMC Bioinformatics 2009, 10:152doi:10.1186/1471-2105-10-152 <a href="http://www.biomedcentral.com/1471-2105/10/152"> Abstract</a> | ||
+ | <li value="17">Duarte C. Oliveira,Mauro Santos,Catarina Milheiriço, João A. Carriço, Susana Vinga, Arlindo L. Oliveira and Hermínia de Lencastre, <b><i>ccrB</i> typing tool: an online resource for stapylococci <i>ccrB</i> sequence typing</b>,J Antimicrob Chemother. 2008 Apr;61(4):959-60. Epub 2008 Jan 27, doi:10.1093/jac/dkn021 | ||
+ | |||
+ | <li value="16">Nuno A. Faria*, <U>João A. Carriço</U>*, Duarte C. Oliveira, Mário Ramirez and Hermínia de Lencastre, <b>Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and susceptible <i>Staphylococcus aureus</i></b>,J Clin Microbiol. 2008 Jan;46(1):136-144.<a href="http://www.ncbi.nlm.nih.gov/pubmed/17989188?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum"> PubMed Abstract</a> | ||
+ | |||
+ | </li><li value="15"> Miragaia, M., <U>João A. Carriço</U>, J. C. Thomas, I. Couto, 5, M. C. Enright, and and Hermínia de Lencastre, <b> Comparison of molecular typing methods for characterization of <i>Staphylococcus epidermidis</i>: a proposal for clone definition </b>,J Clin Microbiol. 2008 Jan;46(1):118-129. <a href="http://www.ncbi.nlm.nih.gov/pubmed/17989196?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum"> PubMed Abstract</a> | ||
+ | |||
+ | </li><li value="14">Raquel Sá-Leão*, Sónia Nunes1,*, António Brito-Avô, Carla R. Alves, <U>João A. Carriço</U>, Joana Saldanha, Jonas S. Almeida, Ilda Santos-Sanches, and Hermínia de | ||
+ | Lencastre, <b>High dynamics of transmission and colonization by <i>Streptococcus pneumoniae</i> and <i>Haemophilus influenzae</i> within a day-care center revealed in a longitudinal study </b>,J Clin Microbiol. 2008 Jan;46(1):225-234. | ||
+ | <a href="http://www.ncbi.nlm.nih.gov/pubmed/18003797?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum"> PubMed Abstract</a> | ||
+ | <li value="13"> | ||
+ | Francisco R. Pinto, <u>João A. Carriço</u>, Mário Ramirez and Jonas S Almeida,<b>Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement</b>, BMC Bioinformatics 2007, 8:44 (07 Feb 2007) <a href="http://www.biomedcentral.com/1471-2105/8/44">Full paper</a> | ||
+ | </li> | ||
+ | <li value="12"> | ||
+ | Almeida JS, C Chen, R Gorlitsky, R Stanislaus, M Aires-de-Sousa, P Eleutério, <u>JA Carriço</u>, A Maretzek, A Bohn, A Chang, F Zhang, R Mitra, GB Mills, X Wang, HF Deus (2006) <b>Data integration gets 'Sloppy'</b>. Nature Biotechnology (9):1070-1071.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16964209&query_hl=3&itool=pubmed_docsum">Pubmed Abstract</a> | ||
+ | |||
+ | </li><li value="11"><u>Carriço, J.A.</u>; C. Silva-Costa; J. Melo-Cristino; F. R. Pinto; H. de Lencastre; J.S.Almeida; M.Ramirez, <b>Illustration of a Common Framework for Relating Multiple Typing Methods by Application to Macrolide-Resistant <i>Streptococcus pyogenes</i></b>, J Clin Microbiol. 2006 Jul;44(7):2524-32 <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=Abstract&list_uids=16825375&query_hl=5&itool=pubmed_docsum">Pubmed Abstract</a> | ||
+ | |||
+ | </li><li value="10">Mato R, Sanches IS, Simas C, Nunes S, <u>Carrico JA</u>, Sousa NG, Frazao N, Saldanha J, Brito-Avo A, Almeida JS, Lencastre HD.<b>Natural History of Drug-Resistant Clones of Streptococcus pneumoniae Colonizing Healthy Children in Portugal.</b>Microb Drug Resist. 2005 Winter;11(4):309-22. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16359190&query_hl=1">Pubmed Abstract</a> | ||
+ | |||
+ | </li><li value="9"> <u>Carriço, J.A.</u> , F.R. Pinto, C. Simas, S. Nunes, N. G. Sousa, N. Frazão, H. de Lencastre, and J.S. Almeida. 2005. <b>Assessment | ||
+ | of band-based similarity coefficients for automatic Type/Subtype | ||
+ | classification of microbial isolates analyzed by Pulsed-Field Gel | ||
+ | Electrophoresis.</b> J Clin Microbiol. 2005 Nov;43(11):5483-90. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16272474&query_hl=3">Pubmed Abstract</a> | ||
+ | |||
+ | |||
+ | </li><li value="8">Sousa N. G., R. Sá-Leão, M.I. Crisóstomo, C. Simas, S. Nunes, N. Frazão, <u>J. Carriço</u>, R. Mato, I. Santos-Sanches, and H. de Lencastre. 2005. <b>Properties of novel international drug-resistant pneumococcal clones identified in day-care centers (DCCs) of Lisbon, Portugal.</b> J Clin Microbiol. 2005 Sep;43(9):4696-703. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16145129&query_hl=3">Pubmed Abstract</a> | ||
+ | |||
+ | </li><li value="7"> I. Serrano, J. Melo-Cristino, <u>J. Carriço</u> and M. Ramirez, <b>Characterization of the genetic lineages responsible for pneumococcal invasive disease in Portugal</b>,J Clin Microbiol. 2005 Apr;43(4):1706-15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15814989">Pubmed Abstract</a><br> | ||
+ | </li><li value="6">Nelson Frazão; António Brito-Avô; Carla Simas; Joana Saldanha; Rosario Mato; Sónia Nunes; Natacha Gonçalves Sousa; <u>João Carriço</u>; Jonas Almeida; Ilda Santos-Sanches; Hermínia de Lencastre, <b>Effect | ||
+ | of the 7-valent conjugate pneumococcal vaccine on carriage and drug | ||
+ | resistance of Streptococcus pneumoniae in healthy children attending | ||
+ | day-care centers in Lisbon</b> Pediatr Infect Dis J. 2005 Mar;24(3):243-52.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15750461">Pubmed Abstract</a> <br></li> | ||
+ | <li value="5">Nunes S, R Sá-Leão, <u>J Carriço</u>, CR Alves, R Mato, A Brito Avô, J Saldanha, JS Almeida, I Santos Sanches, and H de Lencastre (2005) <b>Trends | ||
+ | in drug resistance, serotypes and molecular types of Streptococcus | ||
+ | pneumoniae colonizing pre-school age children attending day care | ||
+ | centers in Lisbon, Portugal – a summary of four years of annual | ||
+ | surveillance.</b>J. Clin. Microbiol. 2005;43 1285-1293   <a href="http://jcm.asm.org/cgi/content/abstract/43/3/1285?etoc">JCM abstract</a><br></li> | ||
+ | | ||
+ | <li value="4">Sara Silva, Rodrigo Gouveia-Oliveira, Antonio Maretzek, <u>Joao Carrico</u>,Thorolfur | ||
+ | Gudnason, Karl G Kristinsson, Karl Ekdahl, Antonio Brito-Avo, Alexander | ||
+ | Tomasz, Ilda S Sanches, Herminia de Lencastre and Jonas S Almeida.<b>Web-based epidemiological surveillance of antibiotic-resistant pneumococci in Day Care Centers</b> BMC Medical Informatics and Decision Making 2003, 3:9  <a href="http://www.biomedcentral.com/1472-6947/3/9/abstract">Abstract</a><br></li> | ||
+ | <li value="3">Maria Miragaia, Isabel Couto, Sandro F. F. Pereira, Karl G. Kristinsson, Henrik Westh, Jens O. Jarløv, <u>João Carriço</u>, Jonas Almeida, Ilda Santos Sanches and Hermínia de Lencastre.<b>Molecular | ||
+ | Characterization of Methicillin Resistant Staphylococcus epidermidis | ||
+ | (MRSE) Clones: Evidence of Geographic Dissemination</b> J Clin Microbiol 2002 Feb;40(2):430-8 <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11825953&dopt=Abstract">Pubmed Abstract</a><br></li> | ||
+ | <li value="2">Almeida, Jonas S.; <u>Carriço, João A.</u> ;Maretzek, António; Fletcher, Madilyn; Noble, Peter; <b>"Analysis of genomic sequences by Chaos Game Representation"</b>, Journal of Bioinformatics, Vol.17 n.5 2001 pages 429-437 <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11331237&dopt=Abstract">Pubmed Abstract</a><br></li> | ||
+ | <li value="1">Santos Sanches, I., R. Mato, H. de Lencastre, A. Tomasz, CEM/NET collaborators: S. Nunes, C. R. Alves, M. Miragaia, <u>J. Carriço</u>,I. | ||
+ | Couto, I. Bonfim, M. A. de Sousa, D. Oliveira, A. Gomes, M. Vaz, | ||
+ | S.Fernandes, S. C. Verde, S. ávila, F. Antunes, R. Sá-Leão, J. | ||
+ | Almeida,and International collaborators: O. Melter, M. Chung, M. | ||
+ | C.Brandileone, E. Castañeda, I. Heitmann, M. Hortal, W. Hryniewicz, | ||
+ | F.Jia, K. Kikuchi, K. G. Kristinsson, J. Liñares, A. Rossi, E. Z. | ||
+ | Savov,J. Schindler, F. Solorzano-Santos, K. Totsuka, M. Venditti, P. | ||
+ | Villari,H. Westh, J. S. Wu, and R. C. Zanella. 2000. <b>Patterns of | ||
+ | multidrug resistance among methicillin-resistant hospital isolates of | ||
+ | coagulase-positive and coagulase-negative staphylococci collected in | ||
+ | the international multicenter study RESIST in 1997 and 1998.</b> Microb. Drug Resist. 6:199-211.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11144420&dopt=Abstract">Pubmed Abstract</a><br></li> | ||
+ | </ol> | ||
+ | </html> | ||